Variant report

Variant	rs73477217
Chromosome Location	chr11:64901619-64901620
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:128)
CpG islands
(count:61)
Chromatin interactive
region (count:40)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:128 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:64898630-64903647	GM12891	blood:	n/a	n/a
2	REST	chr11:64901277-64903344	H1-neurons	neurons:	n/a	chr11:64902089-64902102 chr11:64902638-64902647
3	POLR2A	chr11:64901392-64903365	GM12878	blood:	n/a	n/a
4	SREBP1	chr11:64900878-64903237	GM12878	blood:	n/a	chr11:64902140-64902151
5	MAX	chr11:64901575-64903080	MCF-7	breast:	n/a	n/a
6	POLR2A	chr11:64899360-64903246	GM12878	blood:	n/a	n/a
7	ETS1	chr11:64901593-64902311	K562	blood:	n/a	chr11:64902008-64902017 chr11:64902006-64902019
8	GABPA	chr11:64901183-64903043	SK-N-SH	brain:	n/a	chr11:64901585-64901594
9	HCFC1	chr11:64901357-64903565	Hela-S3	cervix:	n/a	n/a
10	SIN3AK20	chr11:64901322-64902835	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr11:64901423-64902949	A549	lung:	n/a	n/a
12	GABPA	chr11:64901595-64902561	K562	blood:	n/a	n/a
13	POLR2A	chr11:64901504-64903102	GM12878	blood:	n/a	n/a
14	POLR2A	chr11:64901548-64903213	GM12892	blood:	n/a	n/a
15	ZNF263	chr11:64900629-64902986	HEK293-T-REx	kidney:	n/a	chr11:64900893-64900902
16	POLR2A	chr11:64901593-64902991	H1-neurons	neurons:	n/a	n/a
17	JUND	chr11:64901191-64903356	SK-N-SH	brain:	n/a	chr11:64901921-64901929 chr11:64902833-64902842
18	RFX5	chr11:64901331-64904232	SK-N-SH	brain:	n/a	chr11:64902541-64902550 chr11:64902622-64902637
19	PAX5	chr11:64901611-64903004	GM12878	blood:	n/a	chr11:64902661-64902680 chr11:64901713-64901722
20	PBX3	chr11:64901601-64902911	A549	lung:	n/a	chr11:64902522-64902542 chr11:64902541-64902550
21	UBTF	chr11:64901560-64903086	K562	blood:	n/a	n/a
22	POLR2A	chr11:64900676-64903211	HUVEC	blood vessel:	n/a	n/a
23	MAX	chr11:64900703-64903205	ECC-1	luminal epithelium:	n/a	n/a
24	TAF1	chr11:64901549-64903024	ECC-1	luminal epithelium:	n/a	n/a
25	POLR2A	chr11:64898187-64903706	GM12878	blood:	n/a	n/a
26	POLR2A	chr11:64901510-64903061	HL-60	blood:	n/a	n/a
27	SIN3AK20	chr11:64901093-64902498	A549	lung:	n/a	n/a
28	TEAD4	chr11:64900474-64903289	K562	blood:	n/a	n/a
29	POLR2A	chr11:64901452-64902981	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr11:64899473-64903620	Raji	blood:	n/a	n/a
31	ELF1	chr11:64901247-64902977	GM12878	blood:	n/a	n/a
32	SIN3A	chr11:64900731-64903220	H1-hESC	embryonic stem cell:	n/a	chr11:64901834-64901845 chr11:64902634-64902647
33	SIN3AK20	chr11:64901282-64903030	PANC-1	pancreas:	n/a	n/a
34	NR2F2	chr11:64901319-64902919	K562	blood:	n/a	n/a
35	BRCA1	chr11:64901567-64901622	Hela-S3	cervix:	n/a	n/a
36	GABPA	chr11:64901618-64902990	A549	lung:	n/a	n/a
37	MAX	chr11:64901577-64903206	HepG2	liver:	n/a	n/a
38	TAF1	chr11:64901596-64902362	HepG2	liver:	n/a	n/a
39	SMC3	chr11:64901489-64902984	Hela-S3	cervix:	n/a	n/a
40	POLR2A	chr11:64901604-64902864	A549	lung:	n/a	n/a
41	SIN3AK20	chr11:64901340-64902824	K562	blood:	n/a	n/a
42	POLR2A	chr11:64901511-64903261	GM18526	blood:	n/a	n/a
43	MAFK	chr11:64901574-64903032	Hela-S3	cervix:	n/a	n/a
44	POLR2A	chr11:64901341-64903040	Hela-S3	cervix:	n/a	n/a
45	POLR2A	chr11:64901420-64903342	GM12892	blood:	n/a	n/a
46	SMARCB1	chr11:64901386-64902952	Hela-S3	cervix:	n/a	chr11:64901894-64901903
47	GABPA	chr11:64901617-64902948	MCF-7	breast:	n/a	n/a
48	JUND	chr11:64900619-64903257	GM12878	blood:	n/a	chr11:64901921-64901929 chr11:64902833-64902842
49	CHD1	chr11:64900804-64903198	IMR90	lung:	n/a	n/a
50	POLR2A	chr11:64901482-64903118	PBDE	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:64901569-64901619	SKMC	muscle:	n/a
2	chr11:64901569-64901619	HUVEC	blood vessel:	n/a
3	chr11:64901569-64901619	ECC-1	luminal epithelium:	n/a
4	chr11:64901569-64901619	ProgFib	skin:	n/a
5	chr11:64901569-64901619	SK-N-MC	brain:	n/a
6	chr11:64901569-64901619	SK-N-SH_RA	brain:	n/a
7	chr11:64901569-64901619	NB4	blood:	n/a
8	chr11:64901569-64901619	HL-60	blood:	n/a
9	chr11:64901569-64901619	BE2_C	brain:	n/a
10	chr11:64901569-64901619	PFSK-1	brain:	n/a
11	chr11:64901569-64901619	NHBE	bronchial:	n/a
12	chr11:64901569-64901619	NH-A	brain:	n/a
13	chr11:64901569-64901619	GM12892	blood:	n/a
14	chr11:64901569-64901619	HMEC	breast:	n/a
15	chr11:64901569-64901619	AG10803	skin:	n/a
16	chr11:64901569-64901619	ovcar-3	ovarian:	n/a
17	chr11:64901569-64901619	AoSMC	blood vessel:	n/a
18	chr11:64901569-64901619	A549	lung:	n/a
19	chr11:64901569-64901619	SK-N-SH	brain:	n/a
20	chr11:64901569-64901619	Jurkat	blood:	n/a
21	chr11:64901569-64901619	Hepatocyte	liver:	n/a
22	chr11:64901569-64901619	SAEC	small airway:	n/a
23	chr11:64901569-64901619	U87	brain:	n/a
24	chr11:64901569-64901619	GM12891	blood:	n/a
25	chr11:64901569-64901619	HPAEpiC	pulmonary alveolar:	n/a
26	chr11:64901569-64901619	Hela-S3	cervix:	n/a
27	chr11:64901569-64901619	AG09319	gingival:	n/a
28	chr11:64901569-64901619	HRPEpiC	eye:	n/a
29	chr11:64901569-64901619	GM19239	blood:	n/a
30	chr11:64901569-64901619	HRE	kidney:	n/a
31	chr11:64901569-64901619	HCM	heart:	n/a
32	chr11:64901569-64901619	GM12878	blood:	n/a
33	chr11:64901569-64901619	HCPEpiC	choroid plexus:	n/a
34	chr11:64901569-64901619	GM06990	blood:	n/a
35	chr11:64901569-64901619	AG09309	skin:	n/a
36	chr11:64901569-64901619	PrEC	prostate:	n/a
37	chr11:64901569-64901619	HEK293	kidney:	embryo
38	chr11:64901569-64901619	HRCEpiC	kidney:	n/a
39	chr11:64901569-64901619	HAEpiC	amniotic membrane:	n/a
40	chr11:64901569-64901619	Caco-2	colon:	n/a
41	chr11:64901569-64901619	NT2-D1	testis:	n/a
42	chr11:64901569-64901619	H1-hESC	embryonic stem cell:	embryo
43	chr11:64901569-64901619	HCT-116	colon:	n/a
44	chr11:64901569-64901619	MCF-7	breast:	n/a
45	chr11:64901569-64901619	RPTEC	kidney:	n/a
46	chr11:64901569-64901619	HIPEpiC	eye:	n/a
47	chr11:64901569-64901619	HEEpiC	esophagus:	n/a
48	chr11:64901569-64901619	AG04449	skin:	fetal
49	chr11:64901569-64901619	IMR90	lung:	fetal
50	chr11:64901569-64901619	T-47D	breast:	n/a

(count:40 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64901611..64904567-chr11:64970669..64973165,2	MCF-7	breast:
2	chr11:64577984..64579530-chr11:64899937..64901907,3	K562	blood:
3	chr11:64609880..64612266-chr11:64899287..64901632,2	MCF-7	breast:
4	chr11:64900564..64902605-chr11:65189487..65191072,2	MCF-7	breast:
5	chr11:64793560..64795544-chr11:64899674..64902650,3	K562	blood:
6	chr11:64900778..64902782-chr20:45941924..45944566,2	MCF-7	breast:
7	chr11:64899644..64904758-chr11:64914742..64920010,11	K562	blood:
8	chr10:76586419..76588056-chr11:64900862..64902381,2	K562	blood:
9	chr11:64900106..64905064-chr11:64945207..64950571,10	K562	blood:
10	chr11:64899426..64901940-chr11:64936380..64938384,3	MCF-7	breast:
11	chr11:64764510..64767104-chr11:64900807..64902355,2	MCF-7	breast:
12	chr11:64900546..64904208-chr11:64924387..64928430,3	K562	blood:
13	chr11:64900971..64903400-chr11:64973155..64976950,3	MCF-7	breast:
14	chr11:64610673..64614254-chr11:64900941..64904149,4	MCF-7	breast:
15	chr11:64642970..64646207-chr11:64900095..64903878,3	K562	blood:
16	chr11:64901510..64902224-chr19:1274696..1275649,2	Hela-S3	cervix:
17	chr11:64900428..64903035-chr15:81292510..81294627,2	MCF-7	breast:
18	chr11:64897351..64905868-chr11:64946257..64954528,24	K562	blood:
19	chr11:64901616..64902438-chr7:56131650..56132477,2	Hela-S3	cervix:
20	chr11:64900461..64902041-chr11:65032155..65033971,2	MCF-7	breast:
21	chr11:64545204..64548174-chr11:64901244..64903002,2	MCF-7	breast:
22	chr11:64901191..64904408-chr11:64910543..64914377,7	MCF-7	breast:
23	chr11:64901151..64904024-chr11:65027824..65029855,2	K562	blood:
24	chr11:64900888..64904024-chr11:65027824..65031103,3	K562	blood:
25	chr11:64877522..64908330-chr11:64931619..64960265,171	MCF-7	breast:
26	chr11:64901430..64902415-chr3:122232953..122233875,2	Hela-S3	cervix:
27	chr11:64645625..64647922-chr11:64900749..64903645,2	MCF-7	breast:
28	chr11:64899593..64901908-chr11:64970549..64972656,2	MCF-7	breast:
29	chr11:64900055..64903404-chr11:64975247..64978493,3	K562	blood:
30	chr11:64901495..64903969-chr11:65026515..65030932,5	MCF-7	breast:
31	chr11:64898936..64904142-chr11:64915810..64928732,16	K562	blood:
32	chr11:64899089..64905727-chr11:64934867..64942996,32	K562	blood:
33	chr11:64901585..64906315-chr11:65031461..65034896,4	K562	blood:
34	chr11:64894864..64904857-chr11:64934599..64944069,37	K562	blood:
35	chr11:64898985..64901826-chr11:64955533..64957107,2	MCF-7	breast:
36	chr11:64863685..64865502-chr11:64899385..64903204,3	K562	blood:
37	chr11:64683667..64685834-chr11:64900771..64903507,2	K562	blood:
38	chr11:64642626..64644470-chr11:64900095..64903022,2	K562	blood:
39	chr11:64899351..64904069-chr11:64950676..64953624,5	K562	blood:
40	chr11:64898025..64904360-chr11:64945543..64952640,32	MCF-7	breast:

No data

Variant related genes	Relation type
SYVN1	TF binding region
SYVN1	CpG island
ENSG00000249251	Chromatin interaction
ENSG00000269038	Chromatin interaction
ENSG00000270775	Chromatin interaction
ENSG00000110025	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000228300	Chromatin interaction
ENSG00000171219	Chromatin interaction
ENSG00000129103	Chromatin interaction
ENSG00000110047	Chromatin interaction
ENSG00000156650	Chromatin interaction
ENSG00000114030	Chromatin interaction
ENSG00000204710	Chromatin interaction
ENSG00000140406	Chromatin interaction
ENSG00000168066	Chromatin interaction
ENSG00000255058	Chromatin interaction
ENSG00000110046	Chromatin interaction
ENSG00000254614	Chromatin interaction
ENSG00000222477	Chromatin interaction
ENSG00000263770	Chromatin interaction
ENSG00000254455	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000133895	Chromatin interaction
ENSG00000168062	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000014138	Chromatin interaction
ENSG00000068971	Chromatin interaction
ENSG00000255200	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11826724	1.00[AMR][1000 genomes]
rs17146681	1.00[AMR][1000 genomes]
rs57895567	1.00[AMR][1000 genomes]
rs58306239	1.00[AMR][1000 genomes]
rs60034183	1.00[AMR][1000 genomes]
rs60169759	1.00[AMR][1000 genomes]
rs61136517	1.00[AMR][1000 genomes]
rs73477214	1.00[AMR][1000 genomes]
rs73477223	1.00[AMR][1000 genomes]
rs73477224	1.00[AMR][1000 genomes]
rs73477237	1.00[AMR][1000 genomes]
rs73495054	1.00[AMR][1000 genomes]
rs73495060	1.00[AMR][1000 genomes]
rs769438	1.00[AMR][1000 genomes]
rs769439	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64899600-64901800	Flanking Active TSS	Primary B cells from cord blood	blood
2	chr11:64900200-64901800	Flanking Active TSS	Primary hematopoietic stem cells	blood
3	chr11:64900200-64903600	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr11:64900400-64901800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr11:64900400-64901800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
6	chr11:64900400-64901800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:64900400-64902200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:64900400-64902400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
9	chr11:64900600-64901800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
10	chr11:64900600-64901800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:64900600-64901800	Flanking Active TSS	Adipose Nuclei	Adipose
12	chr11:64900600-64902800	Active TSS	HSMMtube	muscle
13	chr11:64900800-64901800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
14	chr11:64900800-64901800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
15	chr11:64900800-64902800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:64900800-64903000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:64900800-64903000	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr11:64900800-64903000	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr11:64900800-64903000	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr11:64900800-64903000	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr11:64900800-64903000	Active TSS	Small Intestine	intestine
22	chr11:64900800-64903000	Active TSS	GM12878-XiMat	blood
23	chr11:64900800-64903200	Active TSS	H9 Cell Line	embryonic stem cell
24	chr11:64900800-64903200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr11:64900800-64903200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:64900800-64903400	Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr11:64900800-64903800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:64901000-64901800	Active TSS	Right Atrium	heart
29	chr11:64901000-64901800	Flanking Active TSS	Stomach Smooth Muscle	stomach
30	chr11:64901000-64902800	Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr11:64901000-64902800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr11:64901000-64902800	Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr11:64901000-64902800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:64901000-64902800	Active TSS	Esophagus	oesophagus
35	chr11:64901000-64902800	Active TSS	Fetal Kidney	kidney
36	chr11:64901000-64902800	Active TSS	NHDF-Ad	bronchial
37	chr11:64901000-64902800	Active TSS	NHLF	lung
38	chr11:64901000-64903000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
39	chr11:64901000-64903000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:64901000-64903000	Active TSS	Gastric	stomach
41	chr11:64901000-64903000	Active TSS	Ovary	ovary
42	chr11:64901000-64903000	Active TSS	Psoas Muscle	Psoas
43	chr11:64901000-64903000	Active TSS	Sigmoid Colon	Sigmoid Colon
44	chr11:64901000-64903200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr11:64901000-64903200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr11:64901200-64901800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
47	chr11:64901200-64902600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:64901200-64902600	Active TSS	Muscle Satellite Cultured Cells	--
49	chr11:64901200-64902800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr11:64901200-64902800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links