Variant report

Variant	rs60169759
Chromosome Location	chr11:64906098-64906099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64902242..64904997-chr11:64905693..64907711,2	K562	blood:
2	chr11:64902231..64906341-chr11:64907764..64913217,6	K562	blood:
3	chr11:64905274..64909204-chr11:64947568..64950044,3	MCF-7	breast:
4	chr11:64877522..64908330-chr11:64931619..64960265,171	MCF-7	breast:
5	chr11:64887204..64889569-chr11:64905657..64908321,2	K562	blood:
6	chr11:64901585..64906315-chr11:65031461..65034896,4	K562	blood:

Variant related genes	Relation type
ENSG00000204710	Chromatin interaction
ENSG00000249251	Chromatin interaction
ENSG00000014138	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000255200	Chromatin interaction
ENSG00000149806	Chromatin interaction
ENSG00000254614	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11819994	1.00[EUR][1000 genomes]
rs11825104	1.00[EUR][1000 genomes]
rs11826724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828131	1.00[EUR][1000 genomes]
rs17145206	1.00[EUR][1000 genomes]
rs17146681	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17882241	1.00[EUR][1000 genomes]
rs17883601	1.00[EUR][1000 genomes]
rs17884528	1.00[EUR][1000 genomes]
rs17885792	1.00[EUR][1000 genomes]
rs17886339	1.00[EUR][1000 genomes]
rs57292990	1.00[EUR][1000 genomes]
rs57895567	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58009266	1.00[EUR][1000 genomes]
rs58306239	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60034183	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60568743	1.00[EUR][1000 genomes]
rs61136517	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61202604	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61231480	1.00[EUR][1000 genomes]
rs61746813	1.00[EUR][1000 genomes]
rs73474770	1.00[EUR][1000 genomes]
rs73474771	1.00[EUR][1000 genomes]
rs73474781	1.00[EUR][1000 genomes]
rs73477004	1.00[EUR][1000 genomes]
rs73477025	1.00[EUR][1000 genomes]
rs73477027	1.00[EUR][1000 genomes]
rs73477209	1.00[EUR][1000 genomes]
rs73477214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73477217	1.00[AMR][1000 genomes]
rs73477223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73477224	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73477233	1.00[EUR][1000 genomes]
rs73477237	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479135	1.00[EUR][1000 genomes]
rs73480916	1.00[EUR][1000 genomes]
rs73480917	1.00[EUR][1000 genomes]
rs73480936	1.00[EUR][1000 genomes]
rs73480948	1.00[EUR][1000 genomes]
rs73481122	1.00[EUR][1000 genomes]
rs73495050	1.00[EUR][1000 genomes]
rs73495054	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73495060	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs769438	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs769439	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64903000-64907000	Weak transcription	Ovary	ovary
2	chr11:64903600-64906200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:64903600-64906200	Weak transcription	NHEK	skin
4	chr11:64903600-64907800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr11:64903600-64911800	Weak transcription	Spleen	Spleen
6	chr11:64903600-64917400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:64903800-64906400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:64903800-64907000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:64903800-64908400	Weak transcription	HepG2	liver
10	chr11:64904000-64906400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr11:64904000-64909400	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:64904200-64913400	Weak transcription	Primary B cells from cord blood	blood
13	chr11:64904400-64906600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:64904400-64906800	Weak transcription	Primary T cells from cord blood	blood
15	chr11:64904400-64908800	Weak transcription	Liver	Liver
16	chr11:64904400-64909400	Weak transcription	Primary B cells from peripheral blood	blood
17	chr11:64904600-64907800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr11:64905000-64909400	Weak transcription	Skeletal Muscle Female	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links