Variant report

Variant	rs61202604
Chromosome Location	chr11:64934502-64934503
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr11:64934143-64934667	HepG2	liver:	n/a	n/a
2	FOXA2	chr11:64934240-64934517	HepG2	liver:	n/a	n/a
3	FOXA1	chr11:64934209-64934579	HepG2	liver:	n/a	n/a
4	FOXA1	chr11:64934164-64934552	HepG2	liver:	n/a	n/a

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64917054..64918980-chr11:64934269..64937265,2	K562	blood:
2	chr11:64934217..64936652-chr11:65025702..65028546,2	K562	blood:
3	chr11:64933286..64936582-chr11:64938443..64942127,3	MCF-7	breast:
4	chr11:64927769..64930739-chr11:64931316..64934508,5	K562	blood:
5	chr11:64934429..64937624-chr11:65263809..65266088,3	K562	blood:
6	chr11:64612059..64614738-chr11:64932959..64934868,2	K562	blood:
7	chr11:64877522..64908330-chr11:64931619..64960265,171	MCF-7	breast:

No data

Variant related genes	Relation type
SPDYC	TF binding region
ENSG00000149809	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000149792	Chromatin interaction
ENSG00000149806	Chromatin interaction
ENSG00000255058	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000162298	Chromatin interaction
ENSG00000270117	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11819994	1.00[EUR][1000 genomes]
rs11825104	1.00[EUR][1000 genomes]
rs11826724	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11828131	1.00[EUR][1000 genomes]
rs17145206	1.00[EUR][1000 genomes]
rs17146681	1.00[EUR][1000 genomes]
rs17882241	1.00[EUR][1000 genomes]
rs17883601	1.00[EUR][1000 genomes]
rs17884528	1.00[EUR][1000 genomes]
rs17885792	1.00[EUR][1000 genomes]
rs17886339	1.00[EUR][1000 genomes]
rs57292990	1.00[EUR][1000 genomes]
rs57895567	1.00[EUR][1000 genomes]
rs58306239	1.00[EUR][1000 genomes]
rs60034183	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60169759	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60568743	1.00[EUR][1000 genomes]
rs61136517	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61231480	1.00[EUR][1000 genomes]
rs73477004	1.00[EUR][1000 genomes]
rs73477025	1.00[EUR][1000 genomes]
rs73477027	1.00[EUR][1000 genomes]
rs73477209	1.00[EUR][1000 genomes]
rs73477214	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73477223	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73477224	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73477233	1.00[EUR][1000 genomes]
rs73477237	0.97[AFR][1000 genomes]
rs73479135	1.00[EUR][1000 genomes]
rs73480916	1.00[EUR][1000 genomes]
rs73480917	1.00[EUR][1000 genomes]
rs73480936	1.00[EUR][1000 genomes]
rs73480948	1.00[EUR][1000 genomes]
rs73495050	1.00[EUR][1000 genomes]
rs73495054	1.00[EUR][1000 genomes]
rs73495060	1.00[EUR][1000 genomes]
rs769438	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs769439	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897713	chr11:64915042-65000719	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64924200-64936400	Weak transcription	Primary B cells from cord blood	blood
2	chr11:64927400-64948400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:64928400-64935200	Weak transcription	K562	blood
4	chr11:64933400-64934600	Active TSS	Duodenum Mucosa	Duodenum
5	chr11:64933400-64935200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:64933400-64937200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr11:64933600-64935800	Weak transcription	Placenta	Placenta
8	chr11:64933600-64936400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:64933600-64936400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:64933600-64948000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr11:64933800-64936400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:64933800-64936400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:64933800-64936600	Weak transcription	NH-A	brain
14	chr11:64933800-64936600	Weak transcription	NHDF-Ad	bronchial
15	chr11:64933800-64936600	Weak transcription	Osteobl	bone
16	chr11:64933800-64947600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:64933800-64947600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:64933800-64947600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr11:64933800-64948200	Weak transcription	Ovary	ovary
20	chr11:64934200-64934800	Flanking Active TSS	Liver	Liver
21	chr11:64934200-64936600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:64934400-64934800	Flanking Active TSS	HepG2	liver
23	chr11:64934400-64935800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:64934400-64936400	Weak transcription	Stomach Mucosa	stomach
25	chr11:64934400-64936600	Weak transcription	Fetal Lung	lung
26	chr11:64934400-64947800	Weak transcription	Rectal Mucosa Donor 29	rectum

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