Variant report

Variant	rs73477214
Chromosome Location	chr11:64900873-64900874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:102)
CpG islands
(count:0)
Chromatin interactive
region (count:31)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:102 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr11:64900806-64901165	K562	blood:	n/a	chr11:64901041-64901061 chr11:64901030-64901050
2	POLR2A	chr11:64898630-64903647	GM12891	blood:	n/a	n/a
3	RELA	chr11:64899715-64901132	GM19193	blood:	n/a	n/a
4	POLR2A	chr11:64899927-64901217	GM12892	blood:	n/a	n/a
5	POLR2A	chr11:64899360-64903246	GM12878	blood:	n/a	n/a
6	YY1	chr11:64900819-64901190	GM12892	blood:	n/a	chr11:64901041-64901061 chr11:64901030-64901050
7	POLR2A	chr11:64899478-64901211	GM12892	blood:	n/a	n/a
8	POLR2A	chr11:64898264-64901259	GM12892	blood:	n/a	n/a
9	POLR2A	chr11:64900683-64901146	K562	blood:	n/a	n/a
10	SPI1	chr11:64900718-64901106	HL-60	blood:	n/a	chr11:64900726-64900739 chr11:64900732-64900745
11	MXI1	chr11:64900833-64900995	K562	blood:	n/a	n/a
12	POLR2A	chr11:64900850-64901370	ProgFib	skin:	n/a	n/a
13	POLR2A	chr11:64899444-64901145	GM12878	blood:	n/a	n/a
14	POLR2A	chr11:64900739-64901160	IMR90	lung:	n/a	n/a
15	MAZ	chr11:64900798-64901048	K562	blood:	n/a	n/a
16	ZNF263	chr11:64900629-64902986	HEK293-T-REx	kidney:	n/a	chr11:64900893-64900902
17	SPI1	chr11:64900685-64901100	GM12891	blood:	n/a	chr11:64900726-64900739 chr11:64900732-64900745
18	YY1	chr11:64900840-64901174	GM12891	blood:	n/a	chr11:64901041-64901061 chr11:64901030-64901050
19	HEY1	chr11:64900825-64901114	HepG2	liver:	n/a	n/a
20	POLR2A	chr11:64899541-64901432	GM18951	blood:	n/a	n/a
21	YY1	chr11:64900770-64901117	HCT-116	colon:	n/a	chr11:64901041-64901061 chr11:64901030-64901050
22	POLR2A	chr11:64900676-64903211	HUVEC	blood vessel:	n/a	n/a
23	RUNX3	chr11:64899839-64901194	GM12878	blood:	n/a	chr11:64900741-64900756
24	ELF1	chr11:64900597-64901022	K562	blood:	n/a	n/a
25	ZNF143	chr11:64900818-64900933	GM12878	blood:	n/a	n/a
26	MAX	chr11:64900703-64903205	ECC-1	luminal epithelium:	n/a	n/a
27	HEY1	chr11:64900777-64901231	HepG2	liver:	n/a	n/a
28	RUNX3	chr11:64900500-64901176	GM12878	blood:	n/a	chr11:64900741-64900756
29	POLR2A	chr11:64900690-64901149	GM12891	blood:	n/a	n/a
30	POLR2A	chr11:64898187-64903706	GM12878	blood:	n/a	n/a
31	RFX5	chr11:64900851-64900932	HepG2	liver:	n/a	n/a
32	TEAD4	chr11:64900474-64903289	K562	blood:	n/a	n/a
33	POLR2A	chr11:64899473-64903620	Raji	blood:	n/a	n/a
34	MYC	chr11:64900839-64901044	MCF-7	breast:	n/a	n/a
35	SIN3A	chr11:64900731-64903220	H1-hESC	embryonic stem cell:	n/a	chr11:64901834-64901845 chr11:64902634-64902647
36	RELA	chr11:64899595-64900886	GM12891	blood:	n/a	n/a
37	MAX	chr11:64900760-64901160	GM12878	blood:	n/a	n/a
38	POLR2A	chr11:64900746-64901176	HepG2	liver:	n/a	n/a
39	YY1	chr11:64900780-64901268	GM12878	blood:	n/a	chr11:64901041-64901061 chr11:64901030-64901050
40	POLR2A	chr11:64900403-64901205	K562	blood:	n/a	n/a
41	POLR2A	chr11:64899790-64901353	GM12878	blood:	n/a	n/a
42	ZEB1	chr11:64900662-64901068	GM12878	blood:	n/a	chr11:64900851-64900860 chr11:64900851-64900863
43	POLR2A	chr11:64900140-64901132	K562	blood:	n/a	n/a
44	POLR2A	chr11:64898412-64901302	GM12878	blood:	n/a	n/a
45	HEY1	chr11:64900786-64901130	K562	blood:	n/a	n/a
46	MYC	chr11:64900790-64901106	K562	blood:	n/a	n/a
47	POLR2A	chr11:64900770-64901160	HepG2	liver:	n/a	n/a
48	POLR2A	chr11:64900754-64901248	HCT-116	colon:	n/a	n/a
49	JUND	chr11:64900619-64903257	GM12878	blood:	n/a	chr11:64901921-64901929 chr11:64902833-64902842
50	CHD1	chr11:64900804-64903198	IMR90	lung:	n/a	n/a

No data

(count:31 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64622436..64624370-chr11:64898964..64901159,2	MCF-7	breast:
2	chr11:64577984..64579530-chr11:64899937..64901907,3	K562	blood:
3	chr11:64609880..64612266-chr11:64899287..64901632,2	MCF-7	breast:
4	chr11:64900564..64902605-chr11:65189487..65191072,2	MCF-7	breast:
5	chr11:64793560..64795544-chr11:64899674..64902650,3	K562	blood:
6	chr11:64900778..64902782-chr20:45941924..45944566,2	MCF-7	breast:
7	chr11:64899644..64904758-chr11:64914742..64920010,11	K562	blood:
8	chr10:76586419..76588056-chr11:64900862..64902381,2	K562	blood:
9	chr10:76586680..76587395-chr11:64900362..64900883,2	HCT-116	colon:
10	chr11:64900106..64905064-chr11:64945207..64950571,10	K562	blood:
11	chr11:64899426..64901940-chr11:64936380..64938384,3	MCF-7	breast:
12	chr11:64764510..64767104-chr11:64900807..64902355,2	MCF-7	breast:
13	chr11:64900546..64904208-chr11:64924387..64928430,3	K562	blood:
14	chr11:64642970..64646207-chr11:64900095..64903878,3	K562	blood:
15	chr11:64900428..64903035-chr15:81292510..81294627,2	MCF-7	breast:
16	chr11:64897351..64905868-chr11:64946257..64954528,24	K562	blood:
17	chr11:64900461..64902041-chr11:65032155..65033971,2	MCF-7	breast:
18	chr11:64877522..64908330-chr11:64931619..64960265,171	MCF-7	breast:
19	chr11:64645625..64647922-chr11:64900749..64903645,2	MCF-7	breast:
20	chr11:64899593..64901908-chr11:64970549..64972656,2	MCF-7	breast:
21	chr11:64900055..64903404-chr11:64975247..64978493,3	K562	blood:
22	chr11:64898936..64904142-chr11:64915810..64928732,16	K562	blood:
23	chr11:64899089..64905727-chr11:64934867..64942996,32	K562	blood:
24	chr11:64894864..64904857-chr11:64934599..64944069,37	K562	blood:
25	chr11:64898985..64901826-chr11:64955533..64957107,2	MCF-7	breast:
26	chr11:64863685..64865502-chr11:64899385..64903204,3	K562	blood:
27	chr11:64683667..64685834-chr11:64900771..64903507,2	K562	blood:
28	chr11:64793895..64795790-chr11:64898693..64901313,2	K562	blood:
29	chr11:64642626..64644470-chr11:64900095..64903022,2	K562	blood:
30	chr11:64899351..64904069-chr11:64950676..64953624,5	K562	blood:
31	chr11:64898025..64904360-chr11:64945543..64952640,32	MCF-7	breast:

No data

Variant related genes	Relation type
SYVN1	TF binding region
ENSG00000222477	Chromatin interaction
ENSG00000110047	Chromatin interaction
ENSG00000110025	Chromatin interaction
ENSG00000156650	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000140406	Chromatin interaction
ENSG00000245532	Chromatin interaction
ENSG00000255058	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000168062	Chromatin interaction
ENSG00000068971	Chromatin interaction
ENSG00000110046	Chromatin interaction
ENSG00000270775	Chromatin interaction
ENSG00000204710	Chromatin interaction
ENSG00000255200	Chromatin interaction
ENSG00000014138	Chromatin interaction
ENSG00000263770	Chromatin interaction
ENSG00000254614	Chromatin interaction
ENSG00000171219	Chromatin interaction
ENSG00000249251	Chromatin interaction
ENSG00000133895	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11819994	1.00[EUR][1000 genomes]
rs11825104	1.00[EUR][1000 genomes]
rs11826724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828131	1.00[EUR][1000 genomes]
rs17145206	1.00[EUR][1000 genomes]
rs17146681	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17882241	1.00[EUR][1000 genomes]
rs17883601	1.00[EUR][1000 genomes]
rs17884528	1.00[EUR][1000 genomes]
rs17885792	1.00[EUR][1000 genomes]
rs17886339	1.00[EUR][1000 genomes]
rs57292990	1.00[EUR][1000 genomes]
rs57895567	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57983247	1.00[EUR][1000 genomes]
rs58009266	1.00[EUR][1000 genomes]
rs58306239	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60034183	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60169759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60568743	1.00[EUR][1000 genomes]
rs61136517	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61202604	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61231480	1.00[EUR][1000 genomes]
rs61746813	1.00[EUR][1000 genomes]
rs73474770	1.00[EUR][1000 genomes]
rs73474771	1.00[EUR][1000 genomes]
rs73474781	1.00[EUR][1000 genomes]
rs73477004	1.00[EUR][1000 genomes]
rs73477025	1.00[EUR][1000 genomes]
rs73477027	1.00[EUR][1000 genomes]
rs73477209	1.00[EUR][1000 genomes]
rs73477217	1.00[AMR][1000 genomes]
rs73477223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73477224	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73477233	1.00[EUR][1000 genomes]
rs73477237	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479135	1.00[EUR][1000 genomes]
rs73480916	1.00[EUR][1000 genomes]
rs73480917	1.00[EUR][1000 genomes]
rs73480936	1.00[EUR][1000 genomes]
rs73480948	1.00[EUR][1000 genomes]
rs73481122	1.00[EUR][1000 genomes]
rs73495050	1.00[EUR][1000 genomes]
rs73495054	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73495060	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs769438	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs769439	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64897000-64901600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:64899400-64901000	Transcr. at gene 5' and 3'	Stomach Smooth Muscle	stomach
3	chr11:64899600-64901800	Flanking Active TSS	Primary B cells from cord blood	blood
4	chr11:64899800-64901200	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
5	chr11:64900000-64901000	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:64900200-64901000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:64900200-64901000	Genic enhancers	Placenta Amnion	Placenta Amnion
8	chr11:64900200-64901000	Transcr. at gene 5' and 3'	K562	blood
9	chr11:64900200-64901800	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr11:64900200-64903600	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr11:64900400-64901000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:64900400-64901000	Transcr. at gene 5' and 3'	Hela-S3	cervix
13	chr11:64900400-64901200	Flanking Active TSS	HMEC	breast
14	chr11:64900400-64901400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:64900400-64901400	Transcr. at gene 5' and 3'	Fetal Intestine Small	intestine
16	chr11:64900400-64901600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr11:64900400-64901600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr11:64900400-64901800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr11:64900400-64901800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
20	chr11:64900400-64901800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:64900400-64902200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:64900400-64902400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
23	chr11:64900600-64901000	Flanking Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr11:64900600-64901000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:64900600-64901000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr11:64900600-64901000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr11:64900600-64901000	Flanking Active TSS	Fetal Kidney	kidney
28	chr11:64900600-64901000	Enhancers	Sigmoid Colon	Sigmoid Colon
29	chr11:64900600-64901000	Flanking Active TSS	HepG2	liver
30	chr11:64900600-64901000	Flanking Active TSS	NHDF-Ad	bronchial
31	chr11:64900600-64901200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:64900600-64901200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr11:64900600-64901200	Flanking Active TSS	Brain Substantia Nigra	brain
34	chr11:64900600-64901200	Flanking Active TSS	Left Ventricle	heart
35	chr11:64900600-64901200	Flanking Active TSS	Stomach Mucosa	stomach
36	chr11:64900600-64901200	Flanking Active TSS	A549	lung
37	chr11:64900600-64901200	Flanking Active TSS	NH-A	brain
38	chr11:64900600-64901400	Flanking Active TSS	H1 Cell Line	embryonic stem cell
39	chr11:64900600-64901400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
40	chr11:64900600-64901400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr11:64900600-64901400	Flanking Active TSS	Brain Anterior Caudate	brain
42	chr11:64900600-64901400	Flanking Active TSS	Colonic Mucosa	Colon
43	chr11:64900600-64901400	Flanking Active TSS	Colon Smooth Muscle	Colon
44	chr11:64900600-64901400	Flanking Active TSS	Duodenum Mucosa	Duodenum
45	chr11:64900600-64901400	Flanking Active TSS	Fetal Thymus	thymus
46	chr11:64900600-64901400	Flanking Active TSS	Right Ventricle	heart
47	chr11:64900600-64901400	Flanking Active TSS	Thymus	Thymus
48	chr11:64900600-64901400	Flanking Active TSS	HUVEC	blood vessel
49	chr11:64900600-64901600	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr11:64900600-64901600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain

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