Variant report

Variant	rs57292990
Chromosome Location	chr11:64836487-64836488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:64836414-64837193	GM12878	blood:	n/a	chr11:64836929-64836940 chr11:64836929-64836938 chr11:64836798-64836810

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64836229..64838255-chr11:64883552..64886004,2	MCF-7	breast:
2	chr11:64835460..64837295-chr11:64843950..64846187,2	K562	blood:
3	chr11:64784559..64786063-chr11:64835391..64837243,2	MCF-7	breast:
4	chr11:64831212..64833575-chr11:64835591..64837138,2	MCF-7	breast:
5	chr11:64817752..64820566-chr11:64835947..64837906,2	K562	blood:
6	chr11:64832014..64834014-chr11:64836154..64838250,2	K562	blood:
7	chr11:64826169..64829330-chr11:64836105..64838372,3	MCF-7	breast:
8	chr11:64780520..64784503-chr11:64834796..64838390,5	MCF-7	breast:
9	chr11:64811350..64814091-chr11:64835463..64837156,2	K562	blood:

No data

Variant related genes	Relation type
CDCA5	TF binding region
ENSG00000174276	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000168060	Chromatin interaction
ENSG00000213465	Chromatin interaction
ENSG00000273003	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10897531	1.00[EUR][1000 genomes]
rs11231892	1.00[EUR][1000 genomes]
rs11819994	1.00[EUR][1000 genomes]
rs11824823	1.00[EUR][1000 genomes]
rs11825104	1.00[EUR][1000 genomes]
rs11826724	1.00[EUR][1000 genomes]
rs11828131	1.00[EUR][1000 genomes]
rs17145206	1.00[EUR][1000 genomes]
rs17146681	1.00[EUR][1000 genomes]
rs17882241	1.00[EUR][1000 genomes]
rs17883601	1.00[EUR][1000 genomes]
rs17884528	1.00[EUR][1000 genomes]
rs17885792	1.00[EUR][1000 genomes]
rs17886339	1.00[EUR][1000 genomes]
rs57895567	1.00[EUR][1000 genomes]
rs57983247	1.00[EUR][1000 genomes]
rs58009266	1.00[EUR][1000 genomes]
rs58306239	1.00[EUR][1000 genomes]
rs60034183	1.00[EUR][1000 genomes]
rs60169759	1.00[EUR][1000 genomes]
rs60568743	1.00[EUR][1000 genomes]
rs61136517	1.00[EUR][1000 genomes]
rs61202604	1.00[EUR][1000 genomes]
rs61231480	1.00[EUR][1000 genomes]
rs61746813	1.00[EUR][1000 genomes]
rs73474770	1.00[EUR][1000 genomes]
rs73474771	1.00[EUR][1000 genomes]
rs73474781	1.00[EUR][1000 genomes]
rs73477004	1.00[EUR][1000 genomes]
rs73477025	1.00[EUR][1000 genomes]
rs73477027	1.00[EUR][1000 genomes]
rs73477209	1.00[EUR][1000 genomes]
rs73477214	1.00[EUR][1000 genomes]
rs73477223	1.00[EUR][1000 genomes]
rs73477224	1.00[EUR][1000 genomes]
rs73477233	1.00[EUR][1000 genomes]
rs73479135	1.00[EUR][1000 genomes]
rs73480916	1.00[EUR][1000 genomes]
rs73480917	1.00[EUR][1000 genomes]
rs73480936	1.00[EUR][1000 genomes]
rs73480948	1.00[EUR][1000 genomes]
rs73481122	1.00[EUR][1000 genomes]
rs73495050	1.00[EUR][1000 genomes]
rs73495054	1.00[EUR][1000 genomes]
rs73495060	1.00[EUR][1000 genomes]
rs73496391	1.00[EUR][1000 genomes]
rs769438	1.00[EUR][1000 genomes]
rs769439	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897709	chr11:64772545-64870779	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv897710	chr11:64772545-64885445	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
4	nsv897711	chr11:64772545-64900270	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64822400-64850800	Weak transcription	Esophagus	oesophagus
2	chr11:64830000-64836800	Weak transcription	Spleen	Spleen
3	chr11:64833600-64845600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:64834000-64838400	Enhancers	GM12878-XiMat	blood
5	chr11:64834200-64837400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:64834200-64850600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr11:64834400-64845000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:64834600-64836800	Weak transcription	K562	blood
9	chr11:64834600-64843000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:64834600-64846200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr11:64834800-64843000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:64834800-64843200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:64834800-64843400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr11:64834800-64843400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:64834800-64844800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:64834800-64845000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:64834800-64847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:64835000-64838000	Enhancers	HepG2	liver
19	chr11:64835000-64843000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr11:64835000-64843200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:64835000-64843400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr11:64835200-64844000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr11:64835400-64843200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:64835400-64845000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:64835600-64837000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:64835600-64843200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:64835800-64837400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:64835800-64837400	Enhancers	Fetal Thymus	thymus
29	chr11:64835800-64837600	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr11:64835800-64843000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr11:64836000-64843000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:64836200-64837400	Enhancers	Hela-S3	cervix
33	chr11:64836200-64837800	Enhancers	Primary hematopoietic stem cells	blood
34	chr11:64836400-64837400	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr11:64836400-64837400	Enhancers	Fetal Intestine Small	intestine
36	chr11:64836400-64837400	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr11:64836400-64837600	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr11:64836400-64837600	Enhancers	Fetal Intestine Large	intestine
39	chr11:64836400-64837800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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