Variant report

Variant	rs11826724
Chromosome Location	chr11:64917368-64917369
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64912371..64919818-chr11:64945990..64951836,8	MCF-7	breast:
2	chr11:64898936..64904142-chr11:64915810..64928732,16	K562	blood:
3	chr11:64889739..64892306-chr11:64916863..64918935,2	K562	blood:
4	chr11:64916690..64920840-chr11:64937382..64942125,6	K562	blood:
5	chr11:64916288..64919866-chr11:64946254..64952518,7	MCF-7	breast:
6	chr11:64911788..64913983-chr11:64917112..64920304,4	MCF-7	breast:
7	chr11:64899295..64903630-chr11:64915332..64921315,16	MCF-7	breast:
8	chr11:64913947..64916896-chr11:64917113..64919116,2	MCF-7	breast:
9	chr11:64912189..64921319-chr11:64935429..64940801,16	K562	blood:
10	chr11:64913280..64915455-chr11:64916522..64918457,2	K562	blood:
11	chr11:64899644..64904758-chr11:64914742..64920010,11	K562	blood:
12	chr11:64917054..64918980-chr11:64934269..64937265,2	K562	blood:
13	chr11:64917276..64919080-chr11:64947521..64949119,2	K562	blood:
14	chr11:64916744..64919692-chr11:65271929..65274057,2	K562	blood:
15	chr11:64915613..64918344-chr11:64926782..64929403,3	K562	blood:
16	chr11:64884276..64886083-chr11:64916905..64919101,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000204710	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000149806	Chromatin interaction
ENSG00000254614	Chromatin interaction
ENSG00000254455	Chromatin interaction
ENSG00000149792	Chromatin interaction
ENSG00000255058	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000222477	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000162298	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11819994	1.00[EUR][1000 genomes]
rs11825104	1.00[EUR][1000 genomes]
rs11828131	1.00[EUR][1000 genomes]
rs17145206	1.00[EUR][1000 genomes]
rs17146681	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17882241	1.00[EUR][1000 genomes]
rs17883601	1.00[EUR][1000 genomes]
rs17884528	1.00[EUR][1000 genomes]
rs17885792	1.00[EUR][1000 genomes]
rs17886339	1.00[EUR][1000 genomes]
rs57292990	1.00[EUR][1000 genomes]
rs57895567	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58009266	1.00[EUR][1000 genomes]
rs58306239	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60034183	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60169759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60568743	1.00[EUR][1000 genomes]
rs61136517	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61202604	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61231480	1.00[EUR][1000 genomes]
rs73474781	1.00[EUR][1000 genomes]
rs73477004	1.00[EUR][1000 genomes]
rs73477025	1.00[EUR][1000 genomes]
rs73477027	1.00[EUR][1000 genomes]
rs73477209	1.00[EUR][1000 genomes]
rs73477214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73477217	1.00[AMR][1000 genomes]
rs73477223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73477224	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73477233	1.00[EUR][1000 genomes]
rs73477237	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479135	1.00[EUR][1000 genomes]
rs73480916	1.00[EUR][1000 genomes]
rs73480917	1.00[EUR][1000 genomes]
rs73480936	1.00[EUR][1000 genomes]
rs73480948	1.00[EUR][1000 genomes]
rs73481122	1.00[EUR][1000 genomes]
rs73495050	1.00[EUR][1000 genomes]
rs73495054	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73495060	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs769438	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs769439	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897713	chr11:64915042-65000719	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64903600-64917400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr11:64913600-64917400	Weak transcription	Esophagus	oesophagus
3	chr11:64914200-64918200	Weak transcription	HepG2	liver
4	chr11:64914600-64917400	Weak transcription	Pancreas	Pancrea
5	chr11:64915000-64917400	Weak transcription	Liver	Liver
6	chr11:64915800-64917400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:64916000-64918400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:64916000-64921000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr11:64916200-64918400	Enhancers	Primary hematopoietic stem cells	blood
10	chr11:64916200-64921000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:64916400-64917400	Weak transcription	HMEC	breast
12	chr11:64916400-64918200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:64916400-64920000	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr11:64916800-64918000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr11:64916800-64918200	Enhancers	GM12878-XiMat	blood
16	chr11:64916800-64918400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:64916800-64919200	Enhancers	Fetal Muscle Leg	muscle
18	chr11:64917000-64918800	Enhancers	Fetal Muscle Trunk	muscle
19	chr11:64917200-64917400	Enhancers	Right Ventricle	heart
20	chr11:64917200-64917800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:64917200-64918000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr11:64917200-64918000	Enhancers	K562	blood
23	chr11:64917200-64918200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr11:64917200-64918400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr11:64917200-64918800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:64917200-64918800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:64917200-64918800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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