Variant report

Variant	rs11825104
Chromosome Location	chr11:64789581-64789582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64789149..64792056-chr11:64811719..64813864,2	MCF-7	breast:
2	chr11:64781382..64783563-chr11:64789288..64792111,2	MCF-7	breast:
3	chr11:64789015..64790595-chr11:64795015..64796992,2	MCF-7	breast:
4	chr11:64788989..64790749-chr11:64880205..64882338,2	K562	blood:
5	chr11:64787248..64789903-chr11:64884461..64886081,2	MCF-7	breast:
6	chr11:64788523..64790432-chr11:64793219..64795287,2	K562	blood:
7	chr11:64784437..64787294-chr11:64787817..64790913,3	MCF-7	breast:

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	ARL2	hsa-miR-16-5p	chr11:64789578-64789598

Variant related genes	Relation type
ENSG00000174276	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000273003	Chromatin interaction
ENSG00000168060	Chromatin interaction
ENSG00000110025	Chromatin interaction
ENSG00000270775	Chromatin interaction
ENSG00000213465	Chromatin interaction
ENSG00000255173	Chromatin interaction
ARL2	miRNA target site

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10897531	1.00[EUR][1000 genomes]
rs11231888	1.00[EUR][1000 genomes]
rs11231892	1.00[EUR][1000 genomes]
rs11819994	1.00[EUR][1000 genomes]
rs11824823	1.00[EUR][1000 genomes]
rs11826724	1.00[EUR][1000 genomes]
rs11828131	1.00[EUR][1000 genomes]
rs17145206	1.00[EUR][1000 genomes]
rs17146681	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs17882241	1.00[EUR][1000 genomes]
rs17883601	1.00[EUR][1000 genomes]
rs17884528	1.00[EUR][1000 genomes]
rs17885792	1.00[EUR][1000 genomes]
rs17886339	1.00[EUR][1000 genomes]
rs35197993	1.00[EUR][1000 genomes]
rs57292990	1.00[EUR][1000 genomes]
rs57895567	1.00[EUR][1000 genomes]
rs57983247	1.00[EUR][1000 genomes]
rs58009266	1.00[EUR][1000 genomes]
rs58306239	1.00[EUR][1000 genomes]
rs60034183	1.00[EUR][1000 genomes]
rs60169759	1.00[EUR][1000 genomes]
rs60568743	1.00[EUR][1000 genomes]
rs61136517	1.00[EUR][1000 genomes]
rs61202604	1.00[EUR][1000 genomes]
rs61231480	1.00[EUR][1000 genomes]
rs61746813	1.00[EUR][1000 genomes]
rs73474770	1.00[EUR][1000 genomes]
rs73474771	1.00[EUR][1000 genomes]
rs73474781	1.00[EUR][1000 genomes]
rs73477004	1.00[EUR][1000 genomes]
rs73477025	1.00[EUR][1000 genomes]
rs73477027	1.00[EUR][1000 genomes]
rs73477209	1.00[EUR][1000 genomes]
rs73477214	1.00[EUR][1000 genomes]
rs73477223	1.00[EUR][1000 genomes]
rs73477224	1.00[EUR][1000 genomes]
rs73477233	1.00[EUR][1000 genomes]
rs73479135	1.00[EUR][1000 genomes]
rs73480916	1.00[EUR][1000 genomes]
rs73480917	1.00[EUR][1000 genomes]
rs73480936	1.00[EUR][1000 genomes]
rs73480948	1.00[EUR][1000 genomes]
rs73481122	1.00[EUR][1000 genomes]
rs73494264	1.00[EUR][1000 genomes]
rs73494273	1.00[EUR][1000 genomes]
rs73495050	1.00[EUR][1000 genomes]
rs73495054	1.00[EUR][1000 genomes]
rs73495060	1.00[EUR][1000 genomes]
rs73496391	1.00[EUR][1000 genomes]
rs769438	0.82[YRI][hapmap];1.00[EUR][1000 genomes]
rs769439	0.83[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897709	chr11:64772545-64870779	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv897710	chr11:64772545-64885445	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
4	nsv897711	chr11:64772545-64900270	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64782400-64794400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:64782600-64794200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:64782600-64794400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr11:64782600-64794400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:64782600-64794400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:64782600-64794400	Weak transcription	Small Intestine	intestine
7	chr11:64782600-64794400	Weak transcription	HSMMtube	muscle
8	chr11:64782600-64794400	Weak transcription	HUVEC	blood vessel
9	chr11:64782600-64794400	Weak transcription	NH-A	brain
10	chr11:64782600-64794400	Weak transcription	NHDF-Ad	bronchial
11	chr11:64782600-64794600	Weak transcription	Right Atrium	heart
12	chr11:64783000-64794400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr11:64783000-64794400	Weak transcription	Stomach Mucosa	stomach
14	chr11:64783400-64790400	Strong transcription	Fetal Intestine Small	intestine
15	chr11:64783800-64794400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:64784000-64789800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr11:64784000-64790000	Strong transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:64784000-64790000	Strong transcription	Thymus	Thymus
19	chr11:64784000-64790200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:64784000-64790200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:64784000-64794400	Weak transcription	Primary B cells from cord blood	blood
22	chr11:64784000-64794400	Weak transcription	Fetal Brain Male	brain
23	chr11:64784200-64789600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:64784200-64789600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:64784200-64789800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:64784200-64790000	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr11:64784200-64790800	Strong transcription	Fetal Muscle Leg	muscle
28	chr11:64784200-64794400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr11:64784400-64790000	Strong transcription	Fetal Muscle Trunk	muscle
30	chr11:64784400-64790200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:64784600-64789800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr11:64784600-64789800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr11:64784600-64789800	Strong transcription	Dnd41	blood
34	chr11:64784600-64790000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:64784600-64790000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr11:64784600-64790400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr11:64784600-64790800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:64785000-64790200	Strong transcription	Brain Anterior Caudate	brain
39	chr11:64785000-64790200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr11:64785000-64790600	Strong transcription	Brain Germinal Matrix	brain
41	chr11:64785200-64789800	Strong transcription	Duodenum Mucosa	Duodenum
42	chr11:64785200-64790000	Strong transcription	H9 Cell Line	embryonic stem cell
43	chr11:64785200-64790000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr11:64785200-64790000	Strong transcription	Primary B cells from peripheral blood	blood
45	chr11:64785200-64790000	Strong transcription	Fetal Thymus	thymus
46	chr11:64785400-64789600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr11:64785400-64789600	Strong transcription	Placenta Amnion	Placenta Amnion
48	chr11:64785400-64789800	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr11:64785400-64789800	Strong transcription	Brain Substantia Nigra	brain
50	chr11:64785400-64790000	Strong transcription	Primary T cells from cord blood	blood

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