Variant report

Variant	rs73477025
Chromosome Location	chr11:64775895-64775896
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:64772580..64786543-chr11:64875055..64887722,37	MCF-7	breast:
2	chr11:64765823..64767446-chr11:64774449..64776725,2	K562	blood:
3	chr11:64774285..64777298-chr11:64781302..64784457,4	MCF-7	breast:
4	chr11:64769114..64776603-chr11:64778484..64784252,8	K562	blood:
5	chr11:64772910..64776480-chr11:64779029..64783569,5	MCF-7	breast:
6	chr11:64771120..64776689-chr11:64779326..64784329,8	K562	blood:
7	chr11:64767765..64771018-chr11:64774055..64777389,4	K562	blood:

Variant related genes	Relation type
ENSG00000273003	Chromatin interaction
ENSG00000213465	Chromatin interaction
ENSG00000174276	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000254501	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10897531	1.00[EUR][1000 genomes]
rs11231888	1.00[EUR][1000 genomes]
rs11231892	1.00[EUR][1000 genomes]
rs11819994	1.00[EUR][1000 genomes]
rs11824823	1.00[EUR][1000 genomes]
rs11825104	1.00[EUR][1000 genomes]
rs11826724	1.00[EUR][1000 genomes]
rs11828131	1.00[EUR][1000 genomes]
rs17145206	1.00[EUR][1000 genomes]
rs17146681	1.00[EUR][1000 genomes]
rs17882241	1.00[EUR][1000 genomes]
rs17883601	1.00[EUR][1000 genomes]
rs17884528	1.00[EUR][1000 genomes]
rs17885792	1.00[EUR][1000 genomes]
rs17886339	1.00[EUR][1000 genomes]
rs35197993	1.00[EUR][1000 genomes]
rs57292990	1.00[EUR][1000 genomes]
rs57895567	1.00[EUR][1000 genomes]
rs57983247	1.00[EUR][1000 genomes]
rs58009266	1.00[EUR][1000 genomes]
rs58306239	1.00[EUR][1000 genomes]
rs60034183	1.00[EUR][1000 genomes]
rs60169759	1.00[EUR][1000 genomes]
rs60568743	1.00[EUR][1000 genomes]
rs61136517	1.00[EUR][1000 genomes]
rs61202604	1.00[EUR][1000 genomes]
rs61231480	1.00[EUR][1000 genomes]
rs61746813	1.00[EUR][1000 genomes]
rs73474770	1.00[EUR][1000 genomes]
rs73474771	1.00[EUR][1000 genomes]
rs73474781	1.00[EUR][1000 genomes]
rs73477004	1.00[EUR][1000 genomes]
rs73477027	1.00[EUR][1000 genomes]
rs73477209	1.00[EUR][1000 genomes]
rs73477214	1.00[EUR][1000 genomes]
rs73477223	1.00[EUR][1000 genomes]
rs73477224	1.00[EUR][1000 genomes]
rs73477233	1.00[EUR][1000 genomes]
rs73479135	1.00[EUR][1000 genomes]
rs73480916	1.00[EUR][1000 genomes]
rs73480917	1.00[EUR][1000 genomes]
rs73480936	1.00[EUR][1000 genomes]
rs73480948	1.00[EUR][1000 genomes]
rs73481122	1.00[EUR][1000 genomes]
rs73494264	1.00[EUR][1000 genomes]
rs73494273	1.00[EUR][1000 genomes]
rs73495050	1.00[EUR][1000 genomes]
rs73495054	1.00[EUR][1000 genomes]
rs73495060	1.00[EUR][1000 genomes]
rs73496391	1.00[EUR][1000 genomes]
rs769438	1.00[EUR][1000 genomes]
rs769439	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897709	chr11:64772545-64870779	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv897710	chr11:64772545-64885445	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
4	nsv897711	chr11:64772545-64900270	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64764800-64781200	Weak transcription	Right Atrium	heart
2	chr11:64765000-64780600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:64767400-64780400	Weak transcription	Pancreas	Pancrea
4	chr11:64771200-64780400	Weak transcription	Fetal Muscle Leg	muscle
5	chr11:64773800-64776000	Enhancers	NHEK	skin
6	chr11:64774000-64776000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:64774400-64776000	Enhancers	HMEC	breast
8	chr11:64774600-64776000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr11:64774600-64776200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:64774600-64780200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:64774600-64780600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:64774800-64776000	Bivalent Enhancer	HepG2	liver
13	chr11:64774800-64780800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:64775000-64780600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:64775000-64780600	Weak transcription	HSMMtube	muscle
16	chr11:64775200-64776000	Enhancers	Hela-S3	cervix
17	chr11:64775200-64780400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:64775200-64780600	Weak transcription	HUVEC	blood vessel
19	chr11:64775400-64776000	Enhancers	A549	lung
20	chr11:64775400-64780600	Weak transcription	Osteobl	bone
21	chr11:64775600-64780400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr11:64775600-64780600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:64775600-64780600	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:64775600-64780600	Weak transcription	HSMM	muscle
25	chr11:64775600-64780800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:64775600-64781000	Weak transcription	Esophagus	oesophagus
27	chr11:64775800-64780400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:64775800-64780400	Weak transcription	NHLF	lung
29	chr11:64775800-64780600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:64775800-64780600	Weak transcription	NH-A	brain
31	chr11:64775800-64780600	Weak transcription	NHDF-Ad	bronchial

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