Variant report

Variant	rs61136517
Chromosome Location	chr11:64895979-64895980
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64894380..64897078-chr11:65268813..65271631,2	K562	blood:
2	chr11:64893476..64896205-chr11:64971626..64973618,2	MCF-7	breast:
3	chr11:64893385..64896364-chr11:64937020..64939208,2	K562	blood:
4	chr11:64895813..64897424-chr11:65195099..65197193,2	MCF-7	breast:
5	chr11:64894021..64896582-chr16:88835798..88838010,2	MCF-7	breast:
6	chr11:64877522..64908330-chr11:64931619..64960265,171	MCF-7	breast:
7	chr11:64894864..64904857-chr11:64934599..64944069,37	K562	blood:
8	chr11:64894025..64897642-chr11:64945042..64952225,7	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000204710	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000255200	Chromatin interaction
ENSG00000014216	Chromatin interaction
ENSG00000254614	Chromatin interaction
ENSG00000249251	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11819994	1.00[EUR][1000 genomes]
rs11824823	1.00[EUR][1000 genomes]
rs11825104	1.00[EUR][1000 genomes]
rs11826724	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828131	1.00[EUR][1000 genomes]
rs17145206	1.00[EUR][1000 genomes]
rs17146681	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17882241	1.00[EUR][1000 genomes]
rs17883601	1.00[EUR][1000 genomes]
rs17884528	1.00[EUR][1000 genomes]
rs17885792	1.00[EUR][1000 genomes]
rs17886339	1.00[EUR][1000 genomes]
rs57292990	1.00[EUR][1000 genomes]
rs57895567	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57983247	1.00[EUR][1000 genomes]
rs58009266	1.00[EUR][1000 genomes]
rs58306239	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60034183	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60169759	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60568743	1.00[EUR][1000 genomes]
rs61202604	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61231480	1.00[EUR][1000 genomes]
rs61746813	1.00[EUR][1000 genomes]
rs73474770	1.00[EUR][1000 genomes]
rs73474771	1.00[EUR][1000 genomes]
rs73474781	1.00[EUR][1000 genomes]
rs73477004	1.00[EUR][1000 genomes]
rs73477025	1.00[EUR][1000 genomes]
rs73477027	1.00[EUR][1000 genomes]
rs73477209	1.00[EUR][1000 genomes]
rs73477214	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73477217	1.00[AMR][1000 genomes]
rs73477223	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73477224	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73477233	1.00[EUR][1000 genomes]
rs73477237	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73479135	1.00[EUR][1000 genomes]
rs73480916	1.00[EUR][1000 genomes]
rs73480917	1.00[EUR][1000 genomes]
rs73480936	1.00[EUR][1000 genomes]
rs73480948	1.00[EUR][1000 genomes]
rs73481122	1.00[EUR][1000 genomes]
rs73495050	1.00[EUR][1000 genomes]
rs73495054	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73495060	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs769438	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs769439	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897711	chr11:64772545-64900270	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64890200-64897200	Weak transcription	Psoas Muscle	Psoas
2	chr11:64890200-64900600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:64890200-64900800	Weak transcription	Right Atrium	heart
4	chr11:64890800-64899200	Weak transcription	Fetal Brain Male	brain
5	chr11:64891000-64899600	Strong transcription	Placenta	Placenta
6	chr11:64891000-64900200	Weak transcription	Fetal Heart	heart
7	chr11:64891200-64900000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:64891200-64900200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:64891400-64900000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr11:64891600-64896800	Strong transcription	Primary B cells from cord blood	blood
11	chr11:64891600-64898400	Strong transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:64891600-64898800	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr11:64891600-64899400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr11:64891600-64899800	Strong transcription	Primary T cells from cord blood	blood
15	chr11:64891600-64899800	Strong transcription	Fetal Stomach	stomach
16	chr11:64891600-64899800	Strong transcription	Fetal Thymus	thymus
17	chr11:64891600-64900400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:64891600-64900400	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr11:64891800-64897400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr11:64891800-64897600	Strong transcription	Liver	Liver
21	chr11:64891800-64898200	Strong transcription	Fetal Muscle Trunk	muscle
22	chr11:64891800-64898800	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr11:64891800-64899000	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr11:64891800-64899000	Strong transcription	Dnd41	blood
25	chr11:64891800-64899200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr11:64891800-64899200	Strong transcription	Brain Cingulate Gyrus	brain
27	chr11:64891800-64899400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
28	chr11:64891800-64899400	Strong transcription	Fetal Muscle Leg	muscle
29	chr11:64891800-64899400	Strong transcription	Stomach Smooth Muscle	stomach
30	chr11:64891800-64899600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr11:64891800-64899600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
32	chr11:64891800-64899600	Strong transcription	Fetal Brain Female	brain
33	chr11:64891800-64899800	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr11:64891800-64899800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr11:64891800-64899800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:64891800-64899800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr11:64891800-64899800	Strong transcription	Fetal Intestine Large	intestine
38	chr11:64891800-64900000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:64891800-64900000	Strong transcription	Fetal Intestine Small	intestine
40	chr11:64891800-64900200	Strong transcription	H9 Cell Line	embryonic stem cell
41	chr11:64891800-64900200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:64891800-64900200	Strong transcription	Muscle Satellite Cultured Cells	--
43	chr11:64891800-64900200	Strong transcription	Brain Anterior Caudate	brain
44	chr11:64891800-64900200	Strong transcription	Brain Hippocampus Middle	brain
45	chr11:64891800-64900200	Strong transcription	Placenta Amnion	Placenta Amnion
46	chr11:64891800-64900200	Strong transcription	NHLF	lung
47	chr11:64891800-64900200	Strong transcription	Osteobl	bone
48	chr11:64891800-64900400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr11:64891800-64900400	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr11:64891800-64900400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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