Variant report

Variant	rs60568743
Chromosome Location	chr11:64810163-64810164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64806669..64810557-chr11:64862016..64868359,8	K562	blood:
2	chr11:64793282..64795774-chr11:64807101..64811680,5	K562	blood:
3	chr11:64793697..64796700-chr11:64806482..64812345,9	MCF-7	breast:
4	chr11:64780179..64786029-chr11:64807067..64810211,7	MCF-7	breast:
5	chr11:64807050..64811411-chr11:64876533..64881108,6	MCF-7	breast:
6	chr11:64808477..64810468-chr11:64816977..64818703,3	MCF-7	breast:
7	chr11:64807534..64810713-chr11:64846257..64849828,3	MCF-7	breast:
8	chr11:64808945..64810714-chr11:64850630..64853153,2	K562	blood:
9	chr11:64806772..64810496-chr11:64862454..64866792,5	K562	blood:
10	chr11:64810091..64812972-chr11:64883728..64886202,2	MCF-7	breast:
11	chr11:64807684..64812709-chr11:64850593..64853492,4	MCF-7	breast:
12	chr11:64808483..64810483-chr11:64810664..64814353,4	K562	blood:
13	chr11:64807810..64812277-chr11:64813364..64817609,8	MCF-7	breast:
14	chr11:64805658..64811611-chr11:64862545..64865451,9	MCF-7	breast:
15	chr11:64809180..64811372-chr11:64815514..64817240,2	K562	blood:
16	chr11:64804480..64810811-chr11:64850224..64856247,12	K562	blood:
17	chr11:64808732..64812218-chr11:64877838..64879922,3	MCF-7	breast:
18	chr11:64794773..64796855-chr11:64809238..64812332,3	K562	blood:
19	chr11:64806644..64812839-chr11:64862132..64865938,9	MCF-7	breast:
20	chr11:64682450..64685608-chr11:64808232..64811277,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000149809	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000254501	Chromatin interaction
ENSG00000068971	Chromatin interaction
ENSG00000110046	Chromatin interaction
ENSG00000266123	Chromatin interaction
ENSG00000273003	Chromatin interaction
ENSG00000146670	Chromatin interaction
ENSG00000270775	Chromatin interaction
ENSG00000162300	Chromatin interaction
ENSG00000168060	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000213465	Chromatin interaction
ENSG00000110025	Chromatin interaction
ENSG00000174276	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10897531	1.00[EUR][1000 genomes]
rs11231888	1.00[EUR][1000 genomes]
rs11231892	1.00[EUR][1000 genomes]
rs11819994	1.00[EUR][1000 genomes]
rs11824823	1.00[EUR][1000 genomes]
rs11825104	1.00[EUR][1000 genomes]
rs11826724	1.00[EUR][1000 genomes]
rs11828131	1.00[EUR][1000 genomes]
rs17145206	1.00[EUR][1000 genomes]
rs17146681	1.00[EUR][1000 genomes]
rs17882241	1.00[EUR][1000 genomes]
rs17883601	1.00[EUR][1000 genomes]
rs17884528	1.00[EUR][1000 genomes]
rs17885792	1.00[EUR][1000 genomes]
rs17886339	1.00[EUR][1000 genomes]
rs35197993	1.00[EUR][1000 genomes]
rs57292990	1.00[EUR][1000 genomes]
rs57895567	1.00[EUR][1000 genomes]
rs57983247	1.00[EUR][1000 genomes]
rs58009266	1.00[EUR][1000 genomes]
rs58306239	1.00[EUR][1000 genomes]
rs60034183	1.00[EUR][1000 genomes]
rs60169759	1.00[EUR][1000 genomes]
rs61136517	1.00[EUR][1000 genomes]
rs61202604	1.00[EUR][1000 genomes]
rs61231480	1.00[EUR][1000 genomes]
rs61746813	1.00[EUR][1000 genomes]
rs73474770	1.00[EUR][1000 genomes]
rs73474771	1.00[EUR][1000 genomes]
rs73474781	1.00[EUR][1000 genomes]
rs73477004	1.00[EUR][1000 genomes]
rs73477025	1.00[EUR][1000 genomes]
rs73477027	1.00[EUR][1000 genomes]
rs73477209	1.00[EUR][1000 genomes]
rs73477214	1.00[EUR][1000 genomes]
rs73477223	1.00[EUR][1000 genomes]
rs73477224	1.00[EUR][1000 genomes]
rs73477233	1.00[EUR][1000 genomes]
rs73479135	1.00[EUR][1000 genomes]
rs73480916	1.00[EUR][1000 genomes]
rs73480917	1.00[EUR][1000 genomes]
rs73480936	1.00[EUR][1000 genomes]
rs73480948	1.00[EUR][1000 genomes]
rs73481122	1.00[EUR][1000 genomes]
rs73494264	1.00[EUR][1000 genomes]
rs73494273	1.00[EUR][1000 genomes]
rs73495050	1.00[EUR][1000 genomes]
rs73495054	1.00[EUR][1000 genomes]
rs73495060	1.00[EUR][1000 genomes]
rs73496391	1.00[EUR][1000 genomes]
rs769438	1.00[EUR][1000 genomes]
rs769439	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897709	chr11:64772545-64870779	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv897710	chr11:64772545-64885445	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
4	nsv897711	chr11:64772545-64900270	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
5	esv3324692	chr11:64806676-64811174	Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64807800-64810400	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr11:64807800-64810600	Active TSS	HUES64 Cell Line	embryonic stem cell
3	chr11:64808000-64810200	Active TSS	H9 Cell Line	embryonic stem cell
4	chr11:64808000-64810200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:64808000-64810200	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr11:64808000-64810200	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr11:64808000-64810200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr11:64808000-64810200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:64808000-64810800	Active TSS	NHLF	lung
10	chr11:64808200-64810200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:64808200-64810400	Active TSS	HSMM	muscle
12	chr11:64809000-64810600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:64809000-64812000	Enhancers	Placenta	Placenta
14	chr11:64809200-64810200	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr11:64809200-64810200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:64809400-64810200	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr11:64809400-64810200	Flanking Active TSS	Brain Germinal Matrix	brain
18	chr11:64809400-64810200	Enhancers	Fetal Heart	heart
19	chr11:64809400-64810200	Enhancers	Spleen	Spleen
20	chr11:64809400-64810600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:64809400-64810600	Enhancers	Fetal Brain Male	brain
22	chr11:64809400-64811400	Weak transcription	Gastric	stomach
23	chr11:64809600-64810200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:64809600-64810200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:64809600-64810200	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr11:64809600-64810200	Enhancers	Primary B cells from peripheral blood	blood
27	chr11:64809600-64810200	Enhancers	Brain Anterior Caudate	brain
28	chr11:64809600-64810200	Enhancers	Brain Hippocampus Middle	brain
29	chr11:64809600-64810200	Active TSS	Brain Inferior Temporal Lobe	brain
30	chr11:64809600-64810200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr11:64809600-64810200	Weak transcription	Ovary	ovary
32	chr11:64809600-64810200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr11:64809600-64810200	Enhancers	HUVEC	blood vessel
34	chr11:64809600-64810200	Enhancers	Osteobl	bone
35	chr11:64809600-64810400	Enhancers	Primary T cells fromperipheralblood	blood
36	chr11:64809600-64810400	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr11:64809600-64810400	Enhancers	Esophagus	oesophagus
38	chr11:64809600-64810400	Enhancers	Pancreas	Pancrea
39	chr11:64809600-64810400	Enhancers	Placenta Amnion	Placenta Amnion
40	chr11:64809600-64810400	Enhancers	Thymus	Thymus
41	chr11:64809600-64810400	Enhancers	HSMMtube	muscle
42	chr11:64809600-64810600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:64809600-64810600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
44	chr11:64809600-64810600	Enhancers	Colon Smooth Muscle	Colon
45	chr11:64809600-64810600	Enhancers	Fetal Lung	lung
46	chr11:64809600-64810800	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr11:64809600-64811000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:64809600-64811200	Weak transcription	Right Atrium	heart
49	chr11:64809600-64811200	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr11:64809600-64811200	Enhancers	Monocytes-CD14+_RO01746	blood

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