Variant report

Variant	rs73477027
Chromosome Location	chr11:64785501-64785502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZKSCAN1	chr11:64785463-64785781	Hela-S3	cervix:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:64785494-64785544	U87	brain:	n/a
2	chr11:64785494-64785544	HCM	heart:	n/a
3	chr11:64785494-64785544	NH-A	brain:	n/a
4	chr11:64785494-64785544	SK-N-SH	brain:	n/a
5	chr11:64785494-64785544	MCF10A-Er-Src	breast:	n/a
6	chr11:64785494-64785544	LNCaP	prostate:	n/a
7	chr11:64785494-64785544	GM19239	blood:	n/a
8	chr11:64785494-64785544	ovcar-3	ovarian:	n/a
9	chr11:64785494-64785544	HCF	heart:	n/a
10	chr11:64785494-64785544	AG09309	skin:	n/a
11	chr11:64785494-64785544	RPTEC	kidney:	n/a
12	chr11:64785494-64785544	Caco-2	colon:	n/a
13	chr11:64785494-64785544	AG09319	gingival:	n/a
14	chr11:64785494-64785544	Hela-S3	cervix:	n/a
15	chr11:64785494-64785544	AG04449	skin:	fetal
16	chr11:64785494-64785544	IMR90	lung:	fetal
17	chr11:64785494-64785544	MCF-7	breast:	n/a
18	chr11:64785494-64785544	T-47D	breast:	n/a
19	chr11:64785494-64785544	GM12891	blood:	n/a
20	chr11:64785494-64785544	H1-hESC	embryonic stem cell:	embryo
21	chr11:64785494-64785544	HAEpiC	amniotic membrane:	n/a
22	chr11:64785494-64785544	HL-60	blood:	n/a
23	chr11:64785494-64785544	SK-N-SH_RA	brain:	n/a
24	chr11:64785494-64785544	ProgFib	skin:	n/a
25	chr11:64785494-64785544	HepG2	liver:	n/a
26	chr11:64785494-64785544	SKMC	muscle:	n/a
27	chr11:64785494-64785544	ECC-1	luminal epithelium:	n/a
28	chr11:64785494-64785544	Hepatocyte	liver:	n/a
29	chr11:64785494-64785544	HEEpiC	esophagus:	n/a
30	chr11:64785494-64785544	BJ	skin:	n/a
31	chr11:64785494-64785544	GM06990	blood:	n/a
32	chr11:64785494-64785544	HUVEC	blood vessel:	n/a
33	chr11:64785494-64785544	GM12892	blood:	n/a
34	chr11:64785494-64785544	HRE	kidney:	n/a
35	chr11:64785494-64785544	HNPCEpiC	eye:	n/a
36	chr11:64785494-64785544	PANC-1	pancreas:	n/a
37	chr11:64785494-64785544	K562	blood:	n/a
38	chr11:64785494-64785544	Jurkat	blood:	n/a
39	chr11:64785494-64785544	AG10803	skin:	n/a
40	chr11:64785494-64785544	HIPEpiC	eye:	n/a
41	chr11:64785494-64785544	HCT-116	colon:	n/a
42	chr11:64785494-64785544	HRPEpiC	eye:	n/a
43	chr11:64785494-64785544	HPAEpiC	pulmonary alveolar:	n/a
44	chr11:64785494-64785544	HMEC	breast:	n/a
45	chr11:64785494-64785544	GM12878	blood:	n/a
46	chr11:64785494-64785544	PrEC	prostate:	n/a
47	chr11:64785494-64785544	PFSK-1	brain:	n/a
48	chr11:64785494-64785544	A549	lung:	n/a
49	chr11:64785494-64785544	SK-N-MC	brain:	n/a
50	chr11:64785494-64785544	AG04450	lung:	fetal

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64772580..64786543-chr11:64875055..64887722,37	MCF-7	breast:
2	chr11:64780179..64786029-chr11:64807067..64810211,7	MCF-7	breast:
3	chr11:64781559..64786098-chr11:64888152..64890441,5	MCF-7	breast:
4	chr11:64645952..64648266-chr11:64784260..64786007,2	K562	blood:
5	chr11:64778507..64787901-chr11:64877920..64890097,31	K562	blood:
6	chr11:64779881..64786783-chr11:64876081..64880870,13	MCF-7	breast:
7	chr11:64783090..64786003-chr11:64844320..64846596,3	MCF-7	breast:
8	chr11:64784437..64787294-chr11:64787817..64790913,3	MCF-7	breast:
9	chr11:64781815..64785733-chr11:64830700..64833952,3	MCF-7	breast:
10	chr11:64779047..64780768-chr11:64783130..64785775,3	MCF-7	breast:
11	chr11:64778393..64787449-chr11:64877655..64886980,25	K562	blood:
12	chr11:64643973..64646390-chr11:64783747..64786510,2	MCF-7	breast:
13	chr11:64611421..64614176-chr11:64782989..64786019,3	MCF-7	breast:
14	chr11:64779401..64787584-chr11:64862745..64867550,9	MCF-7	breast:
15	chr11:64779913..64786139-chr11:64862018..64866625,10	K562	blood:
16	chr11:64783646..64785745-chr11:64792249..64794682,2	MCF-7	breast:

No data

Variant related genes	Relation type
ARL2	TF binding region
ARL2	CpG island
ENSG00000254501	Chromatin interaction
ENSG00000171219	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000149806	Chromatin interaction
ENSG00000110047	Chromatin interaction
ENSG00000213465	Chromatin interaction
ENSG00000149792	Chromatin interaction
ENSG00000270775	Chromatin interaction
ENSG00000168061	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000255173	Chromatin interaction
ENSG00000174276	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10897531	1.00[EUR][1000 genomes]
rs11231888	1.00[EUR][1000 genomes]
rs11231892	1.00[EUR][1000 genomes]
rs11819994	1.00[EUR][1000 genomes]
rs11824823	1.00[EUR][1000 genomes]
rs11825104	1.00[EUR][1000 genomes]
rs11826724	1.00[EUR][1000 genomes]
rs11828131	1.00[EUR][1000 genomes]
rs17145206	1.00[EUR][1000 genomes]
rs17146681	1.00[EUR][1000 genomes]
rs17882241	1.00[EUR][1000 genomes]
rs17883601	1.00[EUR][1000 genomes]
rs17884528	1.00[EUR][1000 genomes]
rs17885792	1.00[EUR][1000 genomes]
rs17886339	1.00[EUR][1000 genomes]
rs35197993	1.00[EUR][1000 genomes]
rs57292990	1.00[EUR][1000 genomes]
rs57895567	1.00[EUR][1000 genomes]
rs57983247	1.00[EUR][1000 genomes]
rs58009266	1.00[EUR][1000 genomes]
rs58306239	1.00[EUR][1000 genomes]
rs60034183	1.00[EUR][1000 genomes]
rs60169759	1.00[EUR][1000 genomes]
rs60568743	1.00[EUR][1000 genomes]
rs61136517	1.00[EUR][1000 genomes]
rs61202604	1.00[EUR][1000 genomes]
rs61231480	1.00[EUR][1000 genomes]
rs61746813	1.00[EUR][1000 genomes]
rs73474770	1.00[EUR][1000 genomes]
rs73474771	1.00[EUR][1000 genomes]
rs73474781	1.00[EUR][1000 genomes]
rs73477004	1.00[EUR][1000 genomes]
rs73477025	1.00[EUR][1000 genomes]
rs73477209	1.00[EUR][1000 genomes]
rs73477214	1.00[EUR][1000 genomes]
rs73477223	1.00[EUR][1000 genomes]
rs73477224	1.00[EUR][1000 genomes]
rs73477233	1.00[EUR][1000 genomes]
rs73479135	1.00[EUR][1000 genomes]
rs73480916	1.00[EUR][1000 genomes]
rs73480917	1.00[EUR][1000 genomes]
rs73480936	1.00[EUR][1000 genomes]
rs73480948	1.00[EUR][1000 genomes]
rs73481122	1.00[EUR][1000 genomes]
rs73494264	1.00[EUR][1000 genomes]
rs73494273	1.00[EUR][1000 genomes]
rs73495050	1.00[EUR][1000 genomes]
rs73495054	1.00[EUR][1000 genomes]
rs73495060	1.00[EUR][1000 genomes]
rs73496391	1.00[EUR][1000 genomes]
rs769438	1.00[EUR][1000 genomes]
rs769439	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897709	chr11:64772545-64870779	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv897710	chr11:64772545-64885445	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
4	nsv897711	chr11:64772545-64900270	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64782400-64785800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr11:64782400-64786000	Weak transcription	Ovary	ovary
3	chr11:64782400-64794400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:64782600-64785600	Weak transcription	Gastric	stomach
5	chr11:64782600-64785800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:64782600-64785800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:64782600-64785800	Weak transcription	Left Ventricle	heart
8	chr11:64782600-64786000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr11:64782600-64787200	Weak transcription	Fetal Kidney	kidney
10	chr11:64782600-64794200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:64782600-64794400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:64782600-64794400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:64782600-64794400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:64782600-64794400	Weak transcription	Small Intestine	intestine
15	chr11:64782600-64794400	Weak transcription	HSMMtube	muscle
16	chr11:64782600-64794400	Weak transcription	HUVEC	blood vessel
17	chr11:64782600-64794400	Weak transcription	NH-A	brain
18	chr11:64782600-64794400	Weak transcription	NHDF-Ad	bronchial
19	chr11:64782600-64794600	Weak transcription	Right Atrium	heart
20	chr11:64782800-64785600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:64782800-64785600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:64782800-64785600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr11:64782800-64785800	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr11:64782800-64785800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr11:64782800-64785800	Weak transcription	Adipose Nuclei	Adipose
26	chr11:64782800-64785800	Weak transcription	Pancreas	Pancrea
27	chr11:64782800-64786200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr11:64782800-64788400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr11:64783000-64785600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr11:64783000-64785600	Weak transcription	Brain Hippocampus Middle	brain
31	chr11:64783000-64785800	Weak transcription	Liver	Liver
32	chr11:64783000-64785800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr11:64783000-64785800	Weak transcription	Right Ventricle	heart
34	chr11:64783000-64785800	Weak transcription	HMEC	breast
35	chr11:64783000-64786000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr11:64783000-64786000	Weak transcription	Colon Smooth Muscle	Colon
37	chr11:64783000-64794400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr11:64783000-64794400	Weak transcription	Stomach Mucosa	stomach
39	chr11:64783200-64785800	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr11:64783200-64785800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr11:64783200-64785800	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr11:64783200-64785800	Weak transcription	Brain Angular Gyrus	brain
43	chr11:64783200-64786000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr11:64783400-64785600	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr11:64783400-64785800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr11:64783400-64790400	Strong transcription	Fetal Intestine Small	intestine
47	chr11:64783600-64787200	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr11:64783800-64794400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr11:64784000-64785600	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr11:64784000-64785800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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