Variant report

Variant	rs73477237
Chromosome Location	chr11:64926837-64926838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11826724	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17146681	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57895567	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58306239	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60034183	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60169759	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61136517	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61202604	0.97[AFR][1000 genomes]
rs73477214	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477217	1.00[AMR][1000 genomes]
rs73477223	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73477224	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73495054	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73495060	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs769438	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs769439	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897713	chr11:64915042-65000719	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64921200-64930600	Weak transcription	HepG2	liver
2	chr11:64924200-64936400	Weak transcription	Primary B cells from cord blood	blood
3	chr11:64926200-64927200	Enhancers	Primary B cells from peripheral blood	blood
4	chr11:64926200-64927200	Flanking Active TSS	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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