Variant report

Variant	rs73524875
Chromosome Location	chr8:9485452-9485453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10089150	1.00[EUR][1000 genomes]
rs10094356	1.00[EUR][1000 genomes]
rs10098965	1.00[EUR][1000 genomes]
rs10101221	1.00[EUR][1000 genomes]
rs10101642	1.00[EUR][1000 genomes]
rs10102866	1.00[EUR][1000 genomes]
rs10104208	1.00[EUR][1000 genomes]
rs10109453	1.00[EUR][1000 genomes]
rs13260490	1.00[EUR][1000 genomes]
rs1458941	1.00[EUR][1000 genomes]
rs17155390	1.00[EUR][1000 genomes]
rs2409572	1.00[EUR][1000 genomes]
rs28452227	1.00[EUR][1000 genomes]
rs28479025	1.00[EUR][1000 genomes]
rs28523514	1.00[EUR][1000 genomes]
rs28635251	1.00[EUR][1000 genomes]
rs2898215	1.00[EUR][1000 genomes]
rs3209607	1.00[EUR][1000 genomes]
rs34625531	1.00[EUR][1000 genomes]
rs4342598	1.00[EUR][1000 genomes]
rs4599815	1.00[EUR][1000 genomes]
rs55670933	1.00[EUR][1000 genomes]
rs55729276	1.00[EUR][1000 genomes]
rs55870346	1.00[EUR][1000 genomes]
rs55893352	1.00[EUR][1000 genomes]
rs56188005	1.00[EUR][1000 genomes]
rs56302934	1.00[EUR][1000 genomes]
rs56326922	1.00[EUR][1000 genomes]
rs56411177	1.00[EUR][1000 genomes]
rs56784931	1.00[EUR][1000 genomes]
rs56951452	1.00[EUR][1000 genomes]
rs57026077	1.00[EUR][1000 genomes]
rs57027206	1.00[EUR][1000 genomes]
rs57673085	1.00[EUR][1000 genomes]
rs58165072	1.00[EUR][1000 genomes]
rs58190269	1.00[EUR][1000 genomes]
rs58361831	1.00[EUR][1000 genomes]
rs58766098	1.00[EUR][1000 genomes]
rs58868633	1.00[EUR][1000 genomes]
rs59400423	1.00[EUR][1000 genomes]
rs59462993	1.00[EUR][1000 genomes]
rs59517107	1.00[EUR][1000 genomes]
rs59815980	1.00[EUR][1000 genomes]
rs60035611	1.00[EUR][1000 genomes]
rs60044335	1.00[EUR][1000 genomes]
rs60206878	1.00[EUR][1000 genomes]
rs60338966	1.00[EUR][1000 genomes]
rs60862678	1.00[EUR][1000 genomes]
rs61515500	1.00[EUR][1000 genomes]
rs7002894	1.00[EUR][1000 genomes]
rs73523206	1.00[EUR][1000 genomes]
rs73523216	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73523232	1.00[EUR][1000 genomes]
rs73524874	1.00[EUR][1000 genomes]
rs73524893	0.86[AFR][1000 genomes]
rs73526914	1.00[EUR][1000 genomes]
rs73526934	1.00[EUR][1000 genomes]
rs73526939	1.00[EUR][1000 genomes]
rs73526944	1.00[EUR][1000 genomes]
rs73526947	1.00[EUR][1000 genomes]
rs73526950	1.00[EUR][1000 genomes]
rs73526954	1.00[EUR][1000 genomes]
rs73529194	1.00[EUR][1000 genomes]
rs73529199	1.00[EUR][1000 genomes]
rs73531222	1.00[EUR][1000 genomes]
rs73531224	1.00[EUR][1000 genomes]
rs73531227	1.00[EUR][1000 genomes]
rs73531236	1.00[EUR][1000 genomes]
rs73531638	1.00[EUR][1000 genomes]
rs73531644	1.00[EUR][1000 genomes]
rs73531647	1.00[EUR][1000 genomes]
rs73533809	1.00[EUR][1000 genomes]
rs73535823	1.00[EUR][1000 genomes]
rs73535825	1.00[EUR][1000 genomes]
rs73535829	1.00[EUR][1000 genomes]
rs73535847	1.00[EUR][1000 genomes]
rs73537913	1.00[EUR][1000 genomes]
rs73537918	1.00[EUR][1000 genomes]
rs73537929	1.00[EUR][1000 genomes]
rs73537933	1.00[EUR][1000 genomes]
rs73537946	1.00[EUR][1000 genomes]
rs73537997	1.00[EUR][1000 genomes]
rs73539914	1.00[EUR][1000 genomes]
rs73539916	1.00[EUR][1000 genomes]
rs73539923	1.00[EUR][1000 genomes]
rs73539929	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73662509	1.00[EUR][1000 genomes]
rs73662510	1.00[EUR][1000 genomes]
rs73662518	1.00[EUR][1000 genomes]
rs73662519	1.00[EUR][1000 genomes]
rs73664743	1.00[EUR][1000 genomes]
rs73664756	1.00[EUR][1000 genomes]
rs73664772	1.00[EUR][1000 genomes]
rs73664774	1.00[EUR][1000 genomes]
rs73664775	1.00[EUR][1000 genomes]
rs73664780	1.00[EUR][1000 genomes]
rs73664783	1.00[EUR][1000 genomes]
rs7388458	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9461000-9486400	Weak transcription	Fetal Intestine Small	intestine
2	chr8:9466400-9491000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:9471000-9487000	Weak transcription	HepG2	liver
4	chr8:9473200-9486000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:9473200-9489400	Weak transcription	HSMM	muscle
6	chr8:9473200-9490000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:9473200-9491000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:9473200-9491200	Weak transcription	HSMMtube	muscle
9	chr8:9473400-9490000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:9474200-9509000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:9475200-9494400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr8:9481000-9486400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr8:9481000-9510800	Weak transcription	Primary B cells from cord blood	blood
14	chr8:9481200-9487600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr8:9481200-9508400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr8:9481400-9487600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr8:9481800-9501400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr8:9483200-9486000	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr8:9483600-9486000	Weak transcription	Liver	Liver
20	chr8:9483800-9486000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr8:9484000-9485600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr8:9484000-9486400	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr8:9484000-9486800	Enhancers	Brain Angular Gyrus	brain
24	chr8:9484200-9486600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr8:9484200-9487000	Enhancers	Brain Anterior Caudate	brain
26	chr8:9484400-9485600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:9484400-9485600	Enhancers	Ovary	ovary
28	chr8:9484400-9485800	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr8:9484400-9486000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr8:9484400-9486200	Enhancers	Primary B cells from peripheral blood	blood
31	chr8:9484400-9486800	Enhancers	Brain Cingulate Gyrus	brain
32	chr8:9484400-9487800	Enhancers	Brain Hippocampus Middle	brain
33	chr8:9484400-9489000	Enhancers	Brain Substantia Nigra	brain
34	chr8:9484600-9486400	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr8:9484600-9488800	Weak transcription	NHDF-Ad	bronchial
36	chr8:9484600-9490000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr8:9484800-9485800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr8:9484800-9486000	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr8:9484800-9486200	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr8:9484800-9488800	Weak transcription	Colon Smooth Muscle	Colon
41	chr8:9484800-9504600	Weak transcription	Primary T cells from cord blood	blood
42	chr8:9485000-9486000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr8:9485000-9486200	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr8:9485000-9486400	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr8:9485000-9495000	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr8:9485000-9502800	Weak transcription	Psoas Muscle	Psoas
47	chr8:9485200-9485600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr8:9485200-9485800	Enhancers	Fetal Heart	heart
49	chr8:9485200-9486200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr8:9485200-9486200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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