Variant report

Variant	rs73664743
Chromosome Location	chr8:9435871-9435872
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10089150	1.00[EUR][1000 genomes]
rs10094356	1.00[EUR][1000 genomes]
rs10098965	1.00[EUR][1000 genomes]
rs10101221	1.00[EUR][1000 genomes]
rs10101642	1.00[EUR][1000 genomes]
rs10102866	1.00[EUR][1000 genomes]
rs10104208	1.00[EUR][1000 genomes]
rs10109453	1.00[EUR][1000 genomes]
rs11249921	1.00[EUR][1000 genomes]
rs13260490	1.00[EUR][1000 genomes]
rs1458941	1.00[EUR][1000 genomes]
rs17150077	1.00[EUR][1000 genomes]
rs17155390	1.00[EUR][1000 genomes]
rs2409572	1.00[EUR][1000 genomes]
rs28452227	1.00[EUR][1000 genomes]
rs28479025	1.00[EUR][1000 genomes]
rs28523514	1.00[EUR][1000 genomes]
rs28635251	1.00[EUR][1000 genomes]
rs2898215	1.00[EUR][1000 genomes]
rs34625531	1.00[EUR][1000 genomes]
rs4342598	1.00[EUR][1000 genomes]
rs4599815	1.00[EUR][1000 genomes]
rs55670933	1.00[EUR][1000 genomes]
rs55729276	1.00[EUR][1000 genomes]
rs55870346	1.00[EUR][1000 genomes]
rs55893352	1.00[EUR][1000 genomes]
rs56188005	1.00[EUR][1000 genomes]
rs56302934	1.00[EUR][1000 genomes]
rs56326922	1.00[EUR][1000 genomes]
rs56411177	1.00[EUR][1000 genomes]
rs56784931	1.00[EUR][1000 genomes]
rs56951452	1.00[EUR][1000 genomes]
rs57026077	1.00[EUR][1000 genomes]
rs57027206	1.00[EUR][1000 genomes]
rs57673085	1.00[EUR][1000 genomes]
rs58165072	1.00[EUR][1000 genomes]
rs58361831	1.00[EUR][1000 genomes]
rs58766098	1.00[EUR][1000 genomes]
rs58868633	1.00[EUR][1000 genomes]
rs59400423	1.00[EUR][1000 genomes]
rs59517107	1.00[EUR][1000 genomes]
rs59815980	1.00[EUR][1000 genomes]
rs60035611	1.00[EUR][1000 genomes]
rs60044335	1.00[EUR][1000 genomes]
rs60206878	1.00[EUR][1000 genomes]
rs60338966	1.00[EUR][1000 genomes]
rs60862678	1.00[EUR][1000 genomes]
rs61515500	1.00[EUR][1000 genomes]
rs7002894	1.00[EUR][1000 genomes]
rs73523206	1.00[EUR][1000 genomes]
rs73523216	1.00[EUR][1000 genomes]
rs73523232	1.00[EUR][1000 genomes]
rs73524874	1.00[EUR][1000 genomes]
rs73524875	1.00[EUR][1000 genomes]
rs73526914	1.00[EUR][1000 genomes]
rs73526934	1.00[EUR][1000 genomes]
rs73526939	1.00[EUR][1000 genomes]
rs73526944	1.00[EUR][1000 genomes]
rs73526947	1.00[EUR][1000 genomes]
rs73526950	1.00[EUR][1000 genomes]
rs73526954	1.00[EUR][1000 genomes]
rs73529194	1.00[EUR][1000 genomes]
rs73529199	1.00[EUR][1000 genomes]
rs73531222	1.00[EUR][1000 genomes]
rs73531224	1.00[EUR][1000 genomes]
rs73531227	1.00[EUR][1000 genomes]
rs73531236	1.00[EUR][1000 genomes]
rs73531638	1.00[EUR][1000 genomes]
rs73531644	1.00[EUR][1000 genomes]
rs73531647	1.00[EUR][1000 genomes]
rs73533809	1.00[EUR][1000 genomes]
rs73535823	1.00[EUR][1000 genomes]
rs73535825	1.00[EUR][1000 genomes]
rs73535829	1.00[EUR][1000 genomes]
rs73535847	1.00[EUR][1000 genomes]
rs73537913	1.00[EUR][1000 genomes]
rs73537918	1.00[EUR][1000 genomes]
rs73537929	1.00[EUR][1000 genomes]
rs73537933	1.00[EUR][1000 genomes]
rs73537946	1.00[EUR][1000 genomes]
rs73537997	1.00[EUR][1000 genomes]
rs73539914	1.00[EUR][1000 genomes]
rs73539916	1.00[EUR][1000 genomes]
rs73539923	1.00[EUR][1000 genomes]
rs73539929	1.00[EUR][1000 genomes]
rs73662509	1.00[EUR][1000 genomes]
rs73662510	1.00[EUR][1000 genomes]
rs73664756	1.00[EUR][1000 genomes]
rs73664772	1.00[EUR][1000 genomes]
rs73664774	1.00[EUR][1000 genomes]
rs73664775	1.00[EUR][1000 genomes]
rs73664780	1.00[EUR][1000 genomes]
rs73664783	1.00[EUR][1000 genomes]
rs7388458	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv497927	chr8:9097611-9544519	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9414400-9459600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:9417200-9450000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr8:9417600-9437600	Weak transcription	Dnd41	blood
4	chr8:9422200-9438400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr8:9424800-9440000	Weak transcription	Fetal Lung	lung
6	chr8:9427400-9450000	Weak transcription	Thymus	Thymus
7	chr8:9428200-9466200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:9428400-9450000	Weak transcription	Psoas Muscle	Psoas
9	chr8:9429000-9437200	Weak transcription	Brain Angular Gyrus	brain
10	chr8:9429000-9450000	Weak transcription	Fetal Kidney	kidney
11	chr8:9429200-9437800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr8:9430200-9442400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:9430200-9449800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr8:9430600-9440400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr8:9431000-9440000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr8:9431000-9447000	Weak transcription	Brain Substantia Nigra	brain
17	chr8:9431000-9448800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr8:9431000-9449400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr8:9431000-9450000	Weak transcription	Colon Smooth Muscle	Colon
20	chr8:9431800-9437400	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr8:9432000-9444400	Weak transcription	NHEK	skin
22	chr8:9432000-9448200	Weak transcription	Fetal Brain Male	brain
23	chr8:9432400-9438200	Weak transcription	Osteobl	bone
24	chr8:9432600-9438000	Weak transcription	HMEC	breast
25	chr8:9432600-9438200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr8:9432600-9438400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr8:9433600-9437200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr8:9433600-9461000	Weak transcription	Fetal Stomach	stomach
29	chr8:9434200-9436000	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr8:9434600-9436000	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr8:9434800-9436400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr8:9434800-9439000	Weak transcription	GM12878-XiMat	blood
33	chr8:9434800-9459000	Weak transcription	Primary B cells from cord blood	blood
34	chr8:9435000-9436000	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr8:9435000-9436000	Enhancers	Fetal Heart	heart
36	chr8:9435000-9436000	Enhancers	Fetal Intestine Small	intestine
37	chr8:9435000-9436000	Enhancers	NHDF-Ad	bronchial
38	chr8:9435000-9438200	Weak transcription	Primary T cells from cord blood	blood
39	chr8:9435200-9436000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:9435200-9436000	Enhancers	Brain Hippocampus Middle	brain
41	chr8:9435200-9439000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr8:9435200-9444000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr8:9435200-9446000	Weak transcription	Fetal Thymus	thymus
44	chr8:9435200-9448800	Weak transcription	HUVEC	blood vessel
45	chr8:9435400-9436000	Enhancers	H1 Cell Line	embryonic stem cell
46	chr8:9435400-9436000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr8:9435400-9437600	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr8:9435400-9437600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr8:9435400-9437600	Weak transcription	Fetal Intestine Large	intestine
50	chr8:9435400-9437600	Weak transcription	HSMM	muscle

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