Variant report

Variant	rs73568863
Chromosome Location	chr11:93754824-93754825
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1945782	1.00[EUR][1000 genomes]
rs2251782	1.00[EUR][1000 genomes]
rs2460068	1.00[EUR][1000 genomes]
rs2511408	1.00[EUR][1000 genomes]
rs58116509	1.00[EUR][1000 genomes]
rs59276869	1.00[EUR][1000 genomes]
rs60611834	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61285551	1.00[EUR][1000 genomes]
rs7113934	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73551201	1.00[EUR][1000 genomes]
rs73552919	1.00[EUR][1000 genomes]
rs73561150	1.00[EUR][1000 genomes]
rs73561172	1.00[EUR][1000 genomes]
rs73563050	1.00[EUR][1000 genomes]
rs73564781	1.00[EUR][1000 genomes]
rs73564788	1.00[EUR][1000 genomes]
rs73566804	1.00[EUR][1000 genomes]
rs73566811	1.00[EUR][1000 genomes]
rs73566818	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73566826	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73566837	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73566842	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73566869	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73568841	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73568844	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73568854	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7928328	1.00[EUR][1000 genomes]
rs7940306	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7944971	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93752200-93758000	Weak transcription	NH-A	brain
2	chr11:93753800-93755800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:93753800-93756200	Flanking Active TSS	NHEK	skin
4	chr11:93754000-93756200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:93754400-93756200	Flanking Active TSS	HMEC	breast
6	chr11:93754800-93755000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:93754800-93755000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:93754800-93755200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:93754800-93755400	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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