Variant report

Variant	rs73561150
Chromosome Location	chr11:93646878-93646879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1945782	1.00[EUR][1000 genomes]
rs2251782	1.00[EUR][1000 genomes]
rs2434983	1.00[EUR][1000 genomes]
rs2460068	1.00[EUR][1000 genomes]
rs2508574	1.00[EUR][1000 genomes]
rs2511408	1.00[EUR][1000 genomes]
rs58116509	1.00[EUR][1000 genomes]
rs584474	1.00[EUR][1000 genomes]
rs592526	1.00[EUR][1000 genomes]
rs59276869	1.00[EUR][1000 genomes]
rs604414	1.00[EUR][1000 genomes]
rs60611834	1.00[EUR][1000 genomes]
rs607826	1.00[EUR][1000 genomes]
rs614003	1.00[EUR][1000 genomes]
rs622231	1.00[EUR][1000 genomes]
rs624883	1.00[EUR][1000 genomes]
rs653934	1.00[EUR][1000 genomes]
rs655208	1.00[EUR][1000 genomes]
rs657177	1.00[EUR][1000 genomes]
rs666470	1.00[EUR][1000 genomes]
rs669937	1.00[EUR][1000 genomes]
rs683660	1.00[EUR][1000 genomes]
rs694307	1.00[EUR][1000 genomes]
rs7113934	1.00[EUR][1000 genomes]
rs73551201	1.00[EUR][1000 genomes]
rs73552919	1.00[EUR][1000 genomes]
rs73561172	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73563050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564781	1.00[EUR][1000 genomes]
rs73564788	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73566804	1.00[EUR][1000 genomes]
rs73566811	1.00[EUR][1000 genomes]
rs73566818	1.00[EUR][1000 genomes]
rs73566826	1.00[EUR][1000 genomes]
rs73566837	1.00[EUR][1000 genomes]
rs73566842	1.00[EUR][1000 genomes]
rs73566869	1.00[EUR][1000 genomes]
rs73568841	1.00[EUR][1000 genomes]
rs73568844	1.00[EUR][1000 genomes]
rs73568854	1.00[EUR][1000 genomes]
rs73568863	1.00[EUR][1000 genomes]
rs7928328	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7932900	0.87[AFR][1000 genomes]
rs7940306	1.00[EUR][1000 genomes]
rs7940598	1.00[EUR][1000 genomes]
rs7944971	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv508650	chr11:93609010-93713576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv1796911	chr11:93642877-93688134	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93641600-93652800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:93642000-93655200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:93642200-93649800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:93646400-93647000	Enhancers	HUES48 Cell Line	embryonic stem cell

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