Variant report

Variant	rs73581133
Chromosome Location	chr6:146817115-146817116
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs60708412	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61511784	1.00[AMR][1000 genomes]
rs6915404	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6926545	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73571863	1.00[AMR][1000 genomes]
rs73577169	1.00[AMR][1000 genomes]
rs73581141	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73586070	1.00[AMR][1000 genomes]
rs73586085	1.00[AMR][1000 genomes]
rs73588020	1.00[AMR][1000 genomes]
rs73588027	1.00[AMR][1000 genomes]
rs73588029	1.00[AMR][1000 genomes]
rs73588035	1.00[AMR][1000 genomes]
rs73588040	1.00[AMR][1000 genomes]
rs73588046	1.00[AMR][1000 genomes]
rs9485101	1.00[AMR][1000 genomes]
rs9497573	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604839	chr6:146305810-146828922	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv886749	chr6:146679735-147123699	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146814200-146817400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:146815600-146817400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:146817000-146817400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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