Variant report
| Variant | rs73588040 |
|---|---|
| Chromosome Location | chr6:146926350-146926351 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:146919103..146921537-chr6:146925047..146927582,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000237468 | Chromatin interaction |
| ENSG00000118492 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs60708412 | 1.00[AMR][1000 genomes] |
| rs61511784 | 1.00[AMR][1000 genomes] |
| rs6915404 | 1.00[AMR][1000 genomes] |
| rs6926545 | 1.00[AMR][1000 genomes] |
| rs73571863 | 1.00[AMR][1000 genomes] |
| rs73581133 | 1.00[AMR][1000 genomes] |
| rs73581141 | 1.00[AMR][1000 genomes] |
| rs73586070 | 1.00[AMR][1000 genomes] |
| rs73586085 | 1.00[AMR][1000 genomes] |
| rs73588020 | 1.00[AMR][1000 genomes] |
| rs73588027 | 1.00[AMR][1000 genomes] |
| rs73588029 | 1.00[AMR][1000 genomes] |
| rs73588035 | 1.00[AMR][1000 genomes] |
| rs73588046 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs912578 | 1.00[AMR][1000 genomes] |
| rs912579 | 1.00[AMR][1000 genomes] |
| rs9485101 | 1.00[AMR][1000 genomes] |
| rs9497573 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1033913 | chr6:146572989-147092365 | Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv538466 | chr6:146572989-147092365 | Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 3 | nsv886749 | chr6:146679735-147123699 | Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
