Variant report

Variant	rs73586085
Chromosome Location	chr6:146875548-146875549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:146870262..146872676-chr6:146874501..146877147,2	K562	blood:
2	chr6:146869556..146872424-chr6:146874913..146877464,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs60708412	1.00[AMR][1000 genomes]
rs61511784	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6915404	1.00[AMR][1000 genomes]
rs6926545	1.00[AMR][1000 genomes]
rs73571863	1.00[AMR][1000 genomes]
rs73581133	1.00[AMR][1000 genomes]
rs73581141	1.00[AMR][1000 genomes]
rs73586070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588020	1.00[AMR][1000 genomes]
rs73588027	1.00[AMR][1000 genomes]
rs73588029	1.00[AMR][1000 genomes]
rs73588035	1.00[AMR][1000 genomes]
rs73588040	1.00[AMR][1000 genomes]
rs73588046	1.00[AMR][1000 genomes]
rs9485101	1.00[AMR][1000 genomes]
rs9497573	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv886749	chr6:146679735-147123699	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146865800-146877400	Weak transcription	Placenta	Placenta
2	chr6:146865800-146878200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:146866400-146881800	Weak transcription	Brain Germinal Matrix	brain
4	chr6:146866600-146875800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:146866600-146876200	Weak transcription	Psoas Muscle	Psoas
6	chr6:146866600-146877800	Weak transcription	Gastric	stomach
7	chr6:146866600-146877800	Weak transcription	Lung	lung
8	chr6:146866600-146883800	Weak transcription	Small Intestine	intestine
9	chr6:146866600-146885800	Weak transcription	Pancreas	Pancrea
10	chr6:146866800-146877600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:146866800-146878000	Weak transcription	Brain Substantia Nigra	brain
12	chr6:146867000-146876000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:146867000-146877200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr6:146867000-146877800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr6:146867000-146880600	Weak transcription	Right Ventricle	heart
16	chr6:146867200-146875600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:146867200-146875600	Weak transcription	Colonic Mucosa	Colon
18	chr6:146867200-146877800	Weak transcription	Primary T cells from cord blood	blood
19	chr6:146867400-146875800	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:146867400-146877400	Weak transcription	Fetal Intestine Small	intestine
21	chr6:146868200-146876800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:146868400-146875600	Weak transcription	HSMMtube	muscle
23	chr6:146868400-146876000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:146868600-146875800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr6:146868800-146875600	Weak transcription	Hela-S3	cervix
26	chr6:146869600-146877000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:146870000-146875800	Weak transcription	Colon Smooth Muscle	Colon
28	chr6:146870000-146876800	Strong transcription	HepG2	liver
29	chr6:146870000-146877000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:146870000-146877000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:146870200-146877000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:146870600-146877000	Strong transcription	HSMM	muscle
33	chr6:146870800-146876800	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr6:146870800-146876800	Strong transcription	NH-A	brain
35	chr6:146870800-146877000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr6:146871000-146875600	Weak transcription	Spleen	Spleen
37	chr6:146871000-146877200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr6:146871200-146875800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr6:146871400-146875600	Weak transcription	Fetal Intestine Large	intestine
40	chr6:146871400-146876000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr6:146871800-146875600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr6:146871800-146876000	Weak transcription	HMEC	breast
43	chr6:146871800-146877800	Weak transcription	Fetal Stomach	stomach
44	chr6:146872000-146875600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr6:146872200-146876800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr6:146872400-146875800	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr6:146872400-146876000	Weak transcription	Fetal Kidney	kidney
48	chr6:146872400-146877200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:146872400-146878200	Weak transcription	Rectal Smooth Muscle	rectum
50	chr6:146872600-146875600	Weak transcription	Aorta	Aorta

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