Variant report

Variant	rs73588035
Chromosome Location	chr6:146922987-146922988
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs60708412	1.00[AMR][1000 genomes]
rs61511784	1.00[AMR][1000 genomes]
rs6915404	1.00[AMR][1000 genomes]
rs6926545	1.00[AMR][1000 genomes]
rs73571863	1.00[AMR][1000 genomes]
rs73581133	1.00[AMR][1000 genomes]
rs73581141	1.00[AMR][1000 genomes]
rs73586070	1.00[AMR][1000 genomes]
rs73586085	1.00[AMR][1000 genomes]
rs73588020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588040	1.00[AMR][1000 genomes]
rs73588046	1.00[AMR][1000 genomes]
rs912578	1.00[AMR][1000 genomes]
rs912579	1.00[AMR][1000 genomes]
rs9485101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv886749	chr6:146679735-147123699	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146920800-146923000	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr6:146921200-146923000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:146921600-146923600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:146922200-146923000	Enhancers	Fetal Intestine Small	intestine
5	chr6:146922800-146923000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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