Variant report

Variant	rs9485101
Chromosome Location	chr6:146918609-146918610
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs60708412	1.00[AMR][1000 genomes]
rs61511784	1.00[AMR][1000 genomes]
rs6915404	1.00[AMR][1000 genomes]
rs6926545	1.00[AMR][1000 genomes]
rs73571863	1.00[AMR][1000 genomes]
rs73581133	1.00[AMR][1000 genomes]
rs73581141	1.00[AMR][1000 genomes]
rs73586070	1.00[AMR][1000 genomes]
rs73586085	1.00[AMR][1000 genomes]
rs73588020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588040	1.00[AMR][1000 genomes]
rs73588046	1.00[AMR][1000 genomes]
rs912578	1.00[AMR][1000 genomes]
rs912579	1.00[AMR][1000 genomes]
rs9497573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv886749	chr6:146679735-147123699	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146914800-146919800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr6:146915000-146919600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:146915000-146919800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr6:146915800-146919800	Weak transcription	Aorta	Aorta
5	chr6:146917600-146919800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:146917800-146919400	Weak transcription	Fetal Heart	heart
7	chr6:146917800-146919600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:146917800-146920000	Weak transcription	Primary B cells from cord blood	blood
9	chr6:146918000-146919800	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr6:146918200-146919200	Weak transcription	NHEK	skin
11	chr6:146918200-146919600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr6:146918200-146919600	Weak transcription	HMEC	breast
13	chr6:146918200-146919800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:146918400-146919000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:146918400-146919600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr6:146918400-146919600	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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