Variant report

Variant	rs73588027
Chromosome Location	chr6:146920694-146920695
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs60708412	1.00[AMR][1000 genomes]
rs61511784	1.00[AMR][1000 genomes]
rs6915404	1.00[AMR][1000 genomes]
rs6926545	1.00[AMR][1000 genomes]
rs73571863	1.00[AMR][1000 genomes]
rs73581133	1.00[AMR][1000 genomes]
rs73581141	1.00[AMR][1000 genomes]
rs73586070	1.00[AMR][1000 genomes]
rs73586085	1.00[AMR][1000 genomes]
rs73588020	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73588040	1.00[AMR][1000 genomes]
rs73588046	1.00[AMR][1000 genomes]
rs912578	1.00[AMR][1000 genomes]
rs912579	1.00[AMR][1000 genomes]
rs9485101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9497573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033913	chr6:146572989-147092365	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538466	chr6:146572989-147092365	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv886749	chr6:146679735-147123699	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:146919600-146920800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:146919600-146921000	Active TSS	Brain Anterior Caudate	brain
3	chr6:146919600-146921200	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:146919800-146920800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:146919800-146920800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
6	chr6:146919800-146920800	Active TSS	Rectal Smooth Muscle	rectum
7	chr6:146920600-146920800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr6:146920600-146920800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr6:146920600-146920800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr6:146920600-146920800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:146920600-146920800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:146920600-146920800	Enhancers	Thymus	Thymus
13	chr6:146920600-146920800	Enhancers	HepG2	liver
14	chr6:146920600-146920800	Active TSS	Monocytes-CD14+_RO01746	blood
15	chr6:146920600-146921000	Active TSS	Rectal Mucosa Donor 29	rectum
16	chr6:146920600-146922200	Weak transcription	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links