Variant report

Variant	rs73593877
Chromosome Location	chr10:19636725-19636726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:106)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:106 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr10:19636627-19636908	HepG2	liver:	n/a	n/a
2	STAT3	chr10:19636631-19636882	MCF10A-Er-Src	breast:	n/a	chr10:19636684-19636691 chr10:19636738-19636749
3	CTCF	chr10:19636660-19636810	AG09319	gingival:	n/a	n/a
4	RAD21	chr10:19636585-19636870	H1-hESC	embryonic stem cell:	n/a	n/a
5	CTCF	chr10:19636696-19636803	NHEK	skin:	n/a	n/a
6	CTCF	chr10:19636660-19636810	HRE	kidney:	n/a	n/a
7	CTCF	chr10:19636680-19636830	BE2_C	brain:	n/a	n/a
8	CTCF	chr10:19636633-19636782	Medullo	brain:	n/a	n/a
9	CTCF	chr10:19636660-19636810	HMEC	breast:	n/a	n/a
10	CTCF	chr10:19636640-19636790	HMEC	breast:	n/a	n/a
11	CTCF	chr10:19636620-19636770	GM06990	blood:	n/a	n/a
12	CTCF	chr10:19636627-19636805	HepG2	liver:	n/a	n/a
13	RAD21	chr10:19636465-19636885	HepG2	liver:	n/a	n/a
14	CTCF	chr10:19636660-19636810	HFF-Myc	foreskin:	n/a	n/a
15	RAD21	chr10:19636591-19636906	MCF-7	breast:	n/a	n/a
16	CTCF	chr10:19636697-19636730	GM13976	blood:	n/a	n/a
17	STAT3	chr10:19636614-19636877	MCF10A-Er-Src	breast:	n/a	chr10:19636684-19636691 chr10:19636738-19636749
18	CTCF	chr10:19636640-19636790	GM12869	blood:	n/a	n/a
19	CTCF	chr10:19636580-19636730	Hela-S3	cervix:	n/a	n/a
20	CTCF	chr10:19636620-19636770	SAEC	small airway:	n/a	n/a
21	CTCF	chr10:19636620-19636770	SK-N-SH_RA	brain:	n/a	n/a
22	CTCF	chr10:19636660-19636810	HA-sp	spinal cord:	n/a	n/a
23	CTCF	chr10:19636640-19636790	RPTEC	kidney:	n/a	n/a
24	CTCF	chr10:19636525-19636844	H1-hESC	embryonic stem cell:	n/a	n/a
25	CTCF	chr10:19636600-19636750	HVMF	connective:	n/a	n/a
26	CTCF	chr10:19636653-19636811	Gliobla	brain:	n/a	n/a
27	CTCF	chr10:19636600-19636750	HCM	heart:	n/a	n/a
28	CTCF	chr10:19636680-19636830	HAc	cerebellar:	n/a	n/a
29	CTCF	chr10:19636643-19636745	SK-N-SH_RA	brain:	n/a	n/a
30	CTCF	chr10:19636620-19636770	HCM	heart:	n/a	n/a
31	CTCF	chr10:19636458-19636974	MCF-7	breast:	n/a	n/a
32	CTCF	chr10:19636715-19636798	MCF-7	breast:	n/a	n/a
33	CTCF	chr10:19636431-19637040	SK-N-SH	brain:	n/a	n/a
34	CTCF	chr10:19636640-19636790	SK-N-SH_RA	brain:	n/a	n/a
35	ZNF143	chr10:19636699-19636850	GM12878	blood:	n/a	n/a
36	CTCF	chr10:19636668-19636736	Kidney_OC	kidney:	n/a	n/a
37	RAD21	chr10:19636606-19636914	ECC-1	luminal epithelium:	n/a	n/a
38	CTCF	chr10:19636680-19636830	AoAF	blood vessel:	n/a	n/a
39	CTCF	chr10:19636640-19636790	HPAF	blood vessel:	n/a	n/a
40	CTCF	chr10:19636680-19636830	AG04450	lung:	n/a	n/a
41	CTCF	chr10:19636660-19636810	MCF-7	breast:	n/a	n/a
42	CTCF	chr10:19636668-19636768	Lung_OC	lung:	n/a	n/a
43	CTCF	chr10:19636680-19636830	GM12874	blood:	n/a	n/a
44	CTCF	chr10:19636620-19636770	AoAF	blood vessel:	n/a	n/a
45	CTCF	chr10:19636620-19636770	HA-sp	spinal cord:	n/a	n/a
46	CTCF	chr10:19636579-19636870	GM12878	blood:	n/a	n/a
47	CTCF	chr10:19636640-19636790	Hela-S3	cervix:	n/a	n/a
48	RAD21	chr10:19636536-19636924	H1-hESC	embryonic stem cell:	n/a	n/a
49	CTCF	chr10:19636616-19636788	Hela-S3	cervix:	n/a	n/a
50	CTCF	chr10:19636580-19636730	HCFaa	heart:	n/a	n/a

No data

Variant related genes	Relation type
MALRD1	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11812272	1.00[EUR][1000 genomes]
rs12257867	1.00[EUR][1000 genomes]
rs1591340	1.00[EUR][1000 genomes]
rs73593871	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466764	chr10:19400845-19979434	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550128	chr10:19400845-19979434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2750885	chr10:19407891-19836364	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1043780	chr10:19415575-19827284	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1035870	chr10:19415575-19832047	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv550129	chr10:19417181-19834795	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1035591	chr10:19417883-19823164	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv540506	chr10:19417883-19823164	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	esv2750886	chr10:19432774-19832094	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv1047513	chr10:19461947-19810770	Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv540507	chr10:19461947-19810770	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv894919	chr10:19514636-19758398	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv894921	chr10:19559785-19683943	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv894922	chr10:19572235-19683943	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv466765	chr10:19579806-19669367	Enhancers Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
16	nsv550133	chr10:19579806-19669367	Strong transcription Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
17	nsv825264	chr10:19586545-19664624	Enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	nsv550134	chr10:19587993-19669311	Enhancers Weak transcription Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
19	nsv894923	chr10:19587993-19683943	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv894924	chr10:19593301-19693587	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	nsv894925	chr10:19596177-19695260	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv894926	chr10:19596177-19710332	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	nsv894927	chr10:19600689-19710332	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	nsv1054363	chr10:19614765-19749374	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	nsv540508	chr10:19614765-19749374	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	nsv894928	chr10:19620439-19695260	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	nsv894929	chr10:19620439-19710332	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19587800-19637800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:19615000-19657000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:19619000-19639400	Weak transcription	HepG2	liver
4	chr10:19635800-19638200	Strong transcription	Fetal Intestine Large	intestine

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