Variant report

Variant	rs73685515
Chromosome Location	chr8:63648383-63648384
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11986494	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16929491	0.86[AFR][1000 genomes]
rs34300611	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55859915	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56095987	1.00[AMR][1000 genomes]
rs56139433	1.00[AMR][1000 genomes]
rs56341071	1.00[AMR][1000 genomes]
rs56678461	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57335101	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57834913	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58323797	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60134196	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60157619	1.00[AMR][1000 genomes]
rs61145974	0.95[AFR][1000 genomes]
rs73683198	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683239	0.95[AFR][1000 genomes]
rs73683240	1.00[AMR][1000 genomes]
rs73683241	0.95[AFR][1000 genomes]
rs73683354	1.00[AMR][1000 genomes]
rs73683361	1.00[AMR][1000 genomes]
rs73683426	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683428	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73683429	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685418	1.00[AMR][1000 genomes]
rs73685423	1.00[AMR][1000 genomes]
rs73685424	1.00[AMR][1000 genomes]
rs73685427	1.00[AMR][1000 genomes]
rs73685430	1.00[AMR][1000 genomes]
rs73685431	1.00[AMR][1000 genomes]
rs73685432	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685433	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685434	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685435	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685437	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685442	1.00[AMR][1000 genomes]
rs73685443	0.81[AFR][1000 genomes]
rs73685445	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685512	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685517	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685818	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685819	1.00[AMR][1000 genomes]
rs73685820	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73685821	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018879	chr8:63281724-63937632	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv831340	chr8:63515126-63702660	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63644400-63648400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr8:63646400-63649000	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr8:63646600-63649000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr8:63646600-63649200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:63646800-63648400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:63647400-63648400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr8:63647400-63648400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr8:63648200-63649200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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