Variant report

Variant	rs73853292
Chromosome Location	chr4:147933381-147933382
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10011414	1.00[AFR][1000 genomes]
rs10029336	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10029415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10032981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13353682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13434880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17022344	1.00[AMR][1000 genomes]
rs28418624	1.00[AMR][1000 genomes]
rs28419085	1.00[AMR][1000 genomes]
rs28427468	1.00[AMR][1000 genomes]
rs28429124	1.00[AFR][1000 genomes]
rs28485213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28489480	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28490972	1.00[AMR][1000 genomes]
rs28580106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28657904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28688131	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28690223	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28698911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73853260	1.00[AMR][1000 genomes]
rs73853282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73856341	1.00[AMR][1000 genomes]
rs73856355	1.00[AMR][1000 genomes]
rs73856360	1.00[AMR][1000 genomes]
rs73856361	1.00[AMR][1000 genomes]
rs9995564	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv461676	chr4:147927227-147962432	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv595652	chr4:147927227-147962432	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1016598	chr4:147931134-148012064	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:147925800-147936600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:147931800-147933600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr4:147932000-147934400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:147932200-147933800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:147932200-147934400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr4:147932200-147934400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:147932400-147934000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:147932600-147933400	Enhancers	Brain Germinal Matrix	brain
9	chr4:147932600-147933800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:147932600-147933800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr4:147932600-147937200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:147933000-147933400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr4:147933200-147933800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr4:147933200-147936400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links