Variant report

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:161030291..161037720-chr3:161038093..161046558,15	MCF-7	breast:
2	chr3:161033236..161036164-chr3:161124055..161126623,3	MCF-7	breast:
3	chr3:61852002..61854331-chr3:161033145..161035721,2	MCF-7	breast:
4	chr3:161031627..161035949-chr3:161055362..161059558,6	MCF-7	breast:
5	chr3:160987464..160989480-chr3:161032587..161035559,2	MCF-7	breast:
6	chr3:160998590..161004098-chr3:161031167..161035957,5	MCF-7	breast:
7	chr3:161031670..161034485-chr3:161051893..161053628,2	MCF-7	breast:
8	chr3:161030909..161038608-chr3:161038848..161046580,20	MCF-7	breast:
9	chr3:161021008..161023752-chr3:161033340..161034847,2	MCF-7	breast:
10	chr3:161032948..161035717-chr3:161058882..161060875,3	MCF-7	breast:
11	chr3:161007104..161011008-chr3:161031241..161034660,5	MCF-7	breast:
12	chr3:161006401..161012112-chr3:161031973..161037314,13	MCF-7	breast:
13	chr3:161025819..161030681-chr3:161030815..161036788,8	MCF-7	breast:
14	chr3:160991428..160993713-chr3:161032397..161034859,2	MCF-7	breast:
15	chr3:161026928..161036306-chr3:161081784..161094254,31	MCF-7	breast:
16	chr3:160995569..160997087-chr3:161032964..161034982,2	MCF-7	breast:
17	chr3:161031194..161033997-chr3:161131950..161133763,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000240138	Chromatin interaction
ENSG00000196542	Chromatin interaction

rSNPs within LD-proxies of this variant (count:12)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv829770	chr3:160989573-161069223	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv4091	chr3:161018540-161063875	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161031800-161034400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr3:161032400-161034800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:161032600-161034000	Enhancers	GM12878-XiMat	blood
4	chr3:161032600-161034200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:161032600-161034800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:161032600-161035000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:161032600-161035000	Enhancers	Hela-S3	cervix
8	chr3:161032600-161035000	Enhancers	NHEK	skin
9	chr3:161032600-161035200	Enhancers	HUVEC	blood vessel
10	chr3:161032800-161034000	Enhancers	Small Intestine	intestine
11	chr3:161032800-161034600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr3:161032800-161034800	Enhancers	HMEC	breast
13	chr3:161032800-161035000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr3:161033000-161034200	Weak transcription	NH-A	brain
15	chr3:161033000-161035000	Enhancers	Stomach Mucosa	stomach
16	chr3:161033200-161034400	Weak transcription	NHDF-Ad	bronchial
17	chr3:161033400-161034800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr3:161033600-161034200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:161033600-161034400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr3:161033600-161035000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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