Variant report
| Variant | rs73875495 |
|---|---|
| Chromosome Location | chr3:161049394-161049395 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr3:161049275-161049461 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| PSMC1P7 | TF binding region |
| ENSG00000169251 | Chromatin interaction |
| ENSG00000271052 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs34262149 | 0.83[AMR][1000 genomes] |
| rs34385057 | 1.00[AMR][1000 genomes] |
| rs34501729 | 1.00[AMR][1000 genomes] |
| rs35630423 | 1.00[AMR][1000 genomes] |
| rs35824993 | 1.00[AMR][1000 genomes] |
| rs35985783 | 1.00[AMR][1000 genomes] |
| rs36046993 | 1.00[AMR][1000 genomes] |
| rs36082266 | 1.00[AMR][1000 genomes] |
| rs73875483 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73875487 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73875491 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs73875499 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931072 | chr3:160669567-161159779 | Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 98 gene(s) | inside rSNPs | diseases |
| 2 | nsv829770 | chr3:160989573-161069223 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 3 | nsv4091 | chr3:161018540-161063875 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 4 | nsv533237 | chr3:161019834-161804660 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 91 gene(s) | inside rSNPs | diseases |
| 5 | nsv829772 | chr3:161047817-161202554 | Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 88 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:161048200-161051800 | Enhancers | HepG2 | liver |
