Variant report

Variant	rs73875487
Chromosome Location	chr3:161035512-161035513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161030291..161037720-chr3:161038093..161046558,15	MCF-7	breast:
2	chr3:161033236..161036164-chr3:161124055..161126623,3	MCF-7	breast:
3	chr3:161026332..161029255-chr3:161034425..161036502,2	MCF-7	breast:
4	chr3:61852002..61854331-chr3:161033145..161035721,2	MCF-7	breast:
5	chr3:161031627..161035949-chr3:161055362..161059558,6	MCF-7	breast:
6	chr3:160987464..160989480-chr3:161032587..161035559,2	MCF-7	breast:
7	chr3:160998590..161004098-chr3:161031167..161035957,5	MCF-7	breast:
8	chr3:160991443..160993916-chr3:161034592..161038621,3	MCF-7	breast:
9	chr3:161030909..161038608-chr3:161038848..161046580,20	MCF-7	breast:
10	chr3:161032948..161035717-chr3:161058882..161060875,3	MCF-7	breast:
11	chr3:161006401..161012112-chr3:161031973..161037314,13	MCF-7	breast:
12	chr3:160980180..160982518-chr3:161034107..161036039,2	MCF-7	breast:
13	chr3:161025819..161030681-chr3:161030815..161036788,8	MCF-7	breast:
14	chr3:161034414..161036485-chr3:161127790..161130788,3	MCF-7	breast:
15	chr3:161023015..161026193-chr3:161034536..161038815,6	MCF-7	breast:
16	chr3:161026928..161036306-chr3:161081784..161094254,31	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs34262149	0.83[AMR][1000 genomes]
rs34385057	1.00[AMR][1000 genomes]
rs34501729	1.00[AMR][1000 genomes]
rs35630423	1.00[AMR][1000 genomes]
rs35824993	1.00[AMR][1000 genomes]
rs35985783	1.00[AMR][1000 genomes]
rs36046993	1.00[AMR][1000 genomes]
rs36082266	1.00[AMR][1000 genomes]
rs73875483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875491	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73875495	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875499	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv829770	chr3:160989573-161069223	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv4091	chr3:161018540-161063875	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161035000-161036400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links