Variant report

Variant	rs73875499
Chromosome Location	chr3:161052281-161052282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs34262149	0.83[AMR][1000 genomes]
rs34385057	1.00[AMR][1000 genomes]
rs34501729	1.00[AMR][1000 genomes]
rs35630423	1.00[AMR][1000 genomes]
rs35824993	1.00[AMR][1000 genomes]
rs35985783	1.00[AMR][1000 genomes]
rs36046993	1.00[AMR][1000 genomes]
rs36082266	1.00[AMR][1000 genomes]
rs73875483	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875487	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875491	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73875495	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv829770	chr3:160989573-161069223	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv4091	chr3:161018540-161063875	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
5	nsv829772	chr3:161047817-161202554	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161051000-161052400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:161051000-161052400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr3:161051400-161052400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:161051600-161052400	Enhancers	Psoas Muscle	Psoas
5	chr3:161051800-161054000	Weak transcription	HepG2	liver
6	chr3:161051800-161061800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:161052200-161057600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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