Variant report

Variant	rs36082266
Chromosome Location	chr3:160824102-160824103
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:160823684..160825879-chr3:160830015..160833205,3	MCF-7	breast:
2	chr3:160824011..160825629-chr3:161089025..161091868,3	MCF-7	breast:
3	chr3:160818503..160825890-chr3:160937051..160945986,18	MCF-7	breast:
4	chr3:160821182..160827138-chr3:160937374..160941314,7	MCF-7	breast:
5	chr3:160813033..160824577-chr3:161083489..161092050,35	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271052	Chromatin interaction
ENSG00000169251	Chromatin interaction
ENSG00000196542	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2231254	0.82[AFR][1000 genomes]
rs34262149	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34385057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34445748	0.84[AFR][1000 genomes]
rs34501729	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35630423	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35667982	0.80[AFR][1000 genomes]
rs35824993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35985783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36011360	0.82[AFR][1000 genomes]
rs36046993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73875483	1.00[AMR][1000 genomes]
rs73875487	1.00[AMR][1000 genomes]
rs73875491	0.83[AMR][1000 genomes]
rs73875495	1.00[AMR][1000 genomes]
rs73875499	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv877704	chr3:160806859-160836006	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv877705	chr3:160818188-160836006	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv877706	chr3:160820175-160826404	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877707	chr3:160820175-160836006	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv3420135	chr3:160821883-160824431	Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv877708	chr3:160821969-160826404	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv877709	chr3:160822198-160826404	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160821800-160824200	Active TSS	Fetal Kidney	kidney
2	chr3:160823200-160832800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:160823400-160824200	Flanking Active TSS	Fetal Heart	heart
4	chr3:160823400-160825600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:160823400-160825800	Weak transcription	Left Ventricle	heart
6	chr3:160823400-160826000	Weak transcription	HMEC	breast
7	chr3:160823400-160826600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr3:160823400-160826600	Weak transcription	HSMM	muscle
9	chr3:160823400-160826800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:160823400-160828800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr3:160823400-160829600	Weak transcription	Aorta	Aorta
12	chr3:160823600-160825800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:160823600-160826400	Weak transcription	Fetal Stomach	stomach
14	chr3:160823600-160826600	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr3:160823600-160828200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr3:160823600-160829200	Weak transcription	Fetal Muscle Leg	muscle
17	chr3:160823800-160824200	Enhancers	Ovary	ovary
18	chr3:160823800-160825200	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr3:160823800-160825600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:160823800-160826200	Weak transcription	NHDF-Ad	bronchial
21	chr3:160823800-160826600	Weak transcription	NHEK	skin
22	chr3:160823800-160826800	Weak transcription	Brain Angular Gyrus	brain
23	chr3:160823800-160828200	Weak transcription	Right Ventricle	heart
24	chr3:160823800-160830400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr3:160824000-160827000	Weak transcription	Brain Inferior Temporal Lobe	brain

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