Variant report

Variant	rs73875491
Chromosome Location	chr3:161042816-161042817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161038392..161046344-chr3:161085640..161093564,25	MCF-7	breast:
2	chr3:160942925..160944989-chr3:161039772..161043116,3	MCF-7	breast:
3	chr3:160940058..160942666-chr3:161042036..161044035,3	MCF-7	breast:
4	chr3:161009978..161012586-chr3:161040587..161043038,3	MCF-7	breast:
5	chr3:161040559..161042979-chr3:161133154..161135842,2	MCF-7	breast:
6	chr3:161040460..161042970-chr3:161125296..161126963,2	MCF-7	breast:
7	chr3:161006869..161011120-chr3:161039575..161043501,7	MCF-7	breast:
8	chr3:161041936..161043684-chr3:161128783..161133001,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SPTSSB-3	chr3:161042701-161044007	NONHSAT093013

No data

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs34385057	0.83[AMR][1000 genomes]
rs34501729	0.83[AMR][1000 genomes]
rs35630423	0.83[AMR][1000 genomes]
rs35824993	0.83[AMR][1000 genomes]
rs35985783	0.83[AMR][1000 genomes]
rs36046993	0.83[AMR][1000 genomes]
rs36082266	0.83[AMR][1000 genomes]
rs73875483	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73875487	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73875495	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73875499	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931072	chr3:160669567-161159779	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv829770	chr3:160989573-161069223	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv4091	chr3:161018540-161063875	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161042200-161043800	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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