Variant report

Variant	rs73900490
Chromosome Location	chr20:22445119-22445120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:41380535..41382323-chr20:22444000..22445520,3	MCF-7	breast:
2	chr17:41398797..41402179-chr20:22444020..22447002,5	K562	blood:
3	chr17:41398964..41400645-chr20:22444000..22445520,3	MCF-7	breast:
4	chr17:41398873..41400845-chr20:22444002..22445520,2	MCF-7	breast:
5	chr17:41380292..41383108-chr20:22444000..22445520,3	K562	blood:
6	chr20:22445014..22446819-chr20:22751132..22753387,2	MCF-7	breast:
7	chr17:41380707..41382412-chr20:22444000..22445502,2	MCF-7	breast:
8	chr17:41398363..41399898-chr20:22444020..22445520,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FOXA2-5	chr20:22445047-22445645	l_2086_chr20:22439239-22449253_liver

No data

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22439400-22448400	Enhancers	Stomach Mucosa	stomach
2	chr20:22440800-22445600	Enhancers	Liver	Liver
3	chr20:22443200-22445400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr20:22443400-22445400	Enhancers	Adipose Nuclei	Adipose
5	chr20:22443400-22445600	Weak transcription	Gastric	stomach
6	chr20:22444400-22448000	Enhancers	A549	lung
7	chr20:22444600-22446200	Weak transcription	K562	blood
8	chr20:22445000-22448200	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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