Variant report

Variant	rs73900495
Chromosome Location	chr20:22452192-22452193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22445335..22448023-chr20:22452182..22454681,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1011104	1.00[EUR][1000 genomes]
rs12624513	1.00[EUR][1000 genomes]
rs1999861	1.00[EUR][1000 genomes]
rs34555951	1.00[ASN][1000 genomes]
rs55798356	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56036654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56182009	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56209167	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56352832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56382661	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58729254	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59348182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60548615	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61118904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72470562	1.00[EUR][1000 genomes]
rs73608964	1.00[EUR][1000 genomes]
rs73608965	1.00[EUR][1000 genomes]
rs73608966	1.00[EUR][1000 genomes]
rs73900487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73900489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73900490	1.00[ASN][1000 genomes]
rs73900492	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73900496	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73900500	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73902804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73902805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs872009	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3428094	chr20:22450900-22453266	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22450000-22452200	Weak transcription	K562	blood
2	chr20:22450400-22452400	Enhancers	Liver	Liver
3	chr20:22450800-22452400	Flanking Active TSS	A549	lung
4	chr20:22451200-22452800	Enhancers	Stomach Mucosa	stomach
5	chr20:22451600-22452600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr20:22451600-22452800	Enhancers	Gastric	stomach
7	chr20:22452000-22452400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr20:22452000-22452400	Enhancers	HepG2	liver
9	chr20:22452000-22452800	Enhancers	Pancreas	Pancrea

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