Variant report

Variant	rs73608966
Chromosome Location	chr20:22486411-22486412
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1011104	1.00[EUR][1000 genomes]
rs12624513	1.00[EUR][1000 genomes]
rs1999861	1.00[EUR][1000 genomes]
rs55798356	1.00[EUR][1000 genomes]
rs56036654	1.00[EUR][1000 genomes]
rs56182009	1.00[EUR][1000 genomes]
rs56209167	1.00[EUR][1000 genomes]
rs56352832	1.00[EUR][1000 genomes]
rs56382661	1.00[EUR][1000 genomes]
rs58729254	1.00[EUR][1000 genomes]
rs59348182	1.00[EUR][1000 genomes]
rs6036174	1.00[EUR][1000 genomes]
rs6048248	1.00[EUR][1000 genomes]
rs6048250	1.00[EUR][1000 genomes]
rs60548615	1.00[EUR][1000 genomes]
rs61118904	1.00[EUR][1000 genomes]
rs6113765	1.00[EUR][1000 genomes]
rs72470562	1.00[EUR][1000 genomes]
rs73608964	1.00[EUR][1000 genomes]
rs73608965	1.00[EUR][1000 genomes]
rs73900487	1.00[EUR][1000 genomes]
rs73900489	1.00[EUR][1000 genomes]
rs73900492	1.00[EUR][1000 genomes]
rs73900495	1.00[EUR][1000 genomes]
rs73900496	1.00[EUR][1000 genomes]
rs73900500	1.00[EUR][1000 genomes]
rs73902804	1.00[EUR][1000 genomes]
rs73902805	1.00[EUR][1000 genomes]
rs872009	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066578	chr20:22472671-22513844	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22483800-22488000	Weak transcription	Stomach Mucosa	stomach
2	chr20:22484200-22488000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr20:22484600-22492000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr20:22485200-22488800	Weak transcription	Fetal Intestine Small	intestine
5	chr20:22485600-22488200	Weak transcription	Fetal Intestine Large	intestine
6	chr20:22486000-22487200	Weak transcription	HepG2	liver
7	chr20:22486000-22487400	Weak transcription	Liver	Liver
8	chr20:22486000-22489000	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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