Variant report

Variant	rs58729254
Chromosome Location	chr20:22458859-22458860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22453263..22454880-chr20:22456523..22459115,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1011104	1.00[EUR][1000 genomes]
rs12624513	1.00[EUR][1000 genomes]
rs1999861	1.00[EUR][1000 genomes]
rs34555951	1.00[ASN][1000 genomes]
rs55798356	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56036654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56182009	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56209167	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56352832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56382661	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59348182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60548615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61118904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72470562	1.00[EUR][1000 genomes]
rs73608964	1.00[EUR][1000 genomes]
rs73608965	1.00[EUR][1000 genomes]
rs73608966	1.00[EUR][1000 genomes]
rs73900487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73900489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73900490	1.00[ASN][1000 genomes]
rs73900492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73900495	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73900496	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73900500	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73902804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73902805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs872009	1.00[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22452800-22464000	Weak transcription	Gastric	stomach
2	chr20:22456600-22461400	Weak transcription	Stomach Mucosa	stomach

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