Variant report

Variant	rs73900489
Chromosome Location	chr20:22430453-22430454
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:22415174..22417433-chr20:22429813..22432715,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1011104	1.00[EUR][1000 genomes]
rs12624513	1.00[EUR][1000 genomes]
rs1999861	1.00[EUR][1000 genomes]
rs34555951	0.95[ASN][1000 genomes]
rs55798356	1.00[EUR][1000 genomes]
rs56036654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56182009	1.00[EUR][1000 genomes]
rs56209167	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56352832	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56382661	1.00[EUR][1000 genomes]
rs58729254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59348182	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60548615	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61118904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72470562	1.00[EUR][1000 genomes]
rs73608964	1.00[EUR][1000 genomes]
rs73608965	1.00[EUR][1000 genomes]
rs73608966	1.00[EUR][1000 genomes]
rs73900487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73900490	0.95[ASN][1000 genomes]
rs73900492	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73900495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73900496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73900500	1.00[EUR][1000 genomes]
rs73902804	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73902805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs872009	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833942	chr20:22283122-22440749	Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22427400-22430800	Enhancers	Fetal Lung	lung
2	chr20:22427600-22430600	Enhancers	Fetal Stomach	stomach
3	chr20:22427600-22431000	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr20:22429000-22431000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr20:22429400-22430600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr20:22429600-22430800	Enhancers	Colon Smooth Muscle	Colon
7	chr20:22429600-22431000	Weak transcription	Fetal Intestine Small	intestine
8	chr20:22429600-22431200	Enhancers	Duodenum Mucosa	Duodenum
9	chr20:22429800-22430600	Bivalent Enhancer	Brain Hippocampus Middle	brain
10	chr20:22429800-22430600	Enhancers	Rectal Smooth Muscle	rectum
11	chr20:22429800-22431000	Enhancers	Stomach Smooth Muscle	stomach
12	chr20:22429800-22431000	Bivalent Enhancer	HepG2	liver
13	chr20:22429800-22431400	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr20:22429800-22431800	Enhancers	Fetal Intestine Large	intestine
15	chr20:22430000-22431200	Enhancers	Stomach Mucosa	stomach
16	chr20:22430000-22431800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr20:22430000-22433200	Weak transcription	A549	lung
18	chr20:22430200-22434200	Weak transcription	Colonic Mucosa	Colon
19	chr20:22430200-22440400	Weak transcription	Gastric	stomach
20	chr20:22430400-22431200	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr20:22430400-22435000	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links