Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1011104	1.00[EUR][1000 genomes]
rs12624513	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1999861	1.00[EUR][1000 genomes]
rs55798356	1.00[EUR][1000 genomes]
rs56036654	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56182009	1.00[EUR][1000 genomes]
rs56209167	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56352832	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56382661	1.00[EUR][1000 genomes]
rs58729254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59348182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60548615	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61118904	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72470562	1.00[EUR][1000 genomes]
rs73608964	1.00[EUR][1000 genomes]
rs73608965	1.00[EUR][1000 genomes]
rs73608966	1.00[EUR][1000 genomes]
rs73900487	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73900489	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73900492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73900495	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73900496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73900500	1.00[EUR][1000 genomes]
rs73902805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs872009	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066578	chr20:22472671-22513844	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22469800-22475400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr20:22471400-22475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr20:22471800-22475600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr20:22472000-22475400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr20:22472000-22475600	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr20:22472200-22480000	Weak transcription	Fetal Intestine Large	intestine
7	chr20:22473400-22475400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr20:22473600-22483400	Weak transcription	Pancreas	Pancrea
9	chr20:22474000-22475200	Weak transcription	HepG2	liver
10	chr20:22475000-22479800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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