Variant report

Variant	rs74087216
Chromosome Location	chr1:71622984-71622985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56351207	1.00[EUR][1000 genomes]
rs58917466	1.00[EUR][1000 genomes]
rs74087217	1.00[EUR][1000 genomes]
rs74087219	1.00[EUR][1000 genomes]
rs74087220	1.00[EUR][1000 genomes]
rs74087224	1.00[EUR][1000 genomes]
rs74090908	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521769	chr1:71578442-71633719	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv947533	chr1:71585150-71624438	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv870650	chr1:71590877-71642977	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3362305	chr1:71594980-71631787	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv818211	chr1:71603703-71633719	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71618000-71623800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:71619800-71624400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:71621200-71623600	Enhancers	Fetal Lung	lung
4	chr1:71621400-71623800	Weak transcription	Lung	lung
5	chr1:71621800-71623600	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
6	chr1:71621800-71623800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr1:71622800-71623000	Enhancers	Colonic Mucosa	Colon
8	chr1:71622800-71623200	Enhancers	Fetal Intestine Large	intestine
9	chr1:71622800-71623200	Weak transcription	Fetal Intestine Small	intestine
10	chr1:71622800-71623400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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