Variant report

Variant	rs58917466
Chromosome Location	chr7:39474963-39474964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs2790678	1.00[AMR][1000 genomes]
rs2790679	1.00[AMR][1000 genomes]
rs55645269	1.00[AMR][1000 genomes]
rs55819706	1.00[AMR][1000 genomes]
rs56341122	1.00[AMR][1000 genomes]
rs56351207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5669	1.00[AMR][1000 genomes]
rs56901340	1.00[AMR][1000 genomes]
rs57083913	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58051959	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58742204	1.00[AMR][1000 genomes]
rs74087146	1.00[AMR][1000 genomes]
rs74087147	1.00[AMR][1000 genomes]
rs74087165	1.00[AMR][1000 genomes]
rs74087166	1.00[AMR][1000 genomes]
rs74087171	1.00[AMR][1000 genomes]
rs74087216	1.00[EUR][1000 genomes]
rs74087217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74089179	1.00[AMR][1000 genomes]
rs74089189	1.00[AMR][1000 genomes]
rs74090215	1.00[AMR][1000 genomes]
rs74090216	1.00[AMR][1000 genomes]
rs74090219	1.00[AMR][1000 genomes]
rs74090225	1.00[AMR][1000 genomes]
rs74090230	1.00[AMR][1000 genomes]
rs74090240	1.00[AMR][1000 genomes]
rs74090247	1.00[AMR][1000 genomes]
rs74090248	1.00[AMR][1000 genomes]
rs74090249	1.00[AMR][1000 genomes]
rs74090250	1.00[AMR][1000 genomes]
rs74090254	1.00[AMR][1000 genomes]
rs74090258	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090260	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090263	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090269	1.00[AMR][1000 genomes]
rs74090271	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090283	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090292	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090908	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7527083	1.00[AMR][1000 genomes]
rs7537247	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv966782	chr7:39454992-39581886	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39473000-39498000	Weak transcription	Pancreas	Pancrea

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