Variant report

Variant	rs74090269
Chromosome Location	chr1:71560437-71560438
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71557305..71559385-chr1:71560136..71562584,2	K562	blood:

Variant related genes	Relation type
ENSG00000229956	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs17090783	1.00[EUR][1000 genomes]
rs17090812	1.00[EUR][1000 genomes]
rs2790678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2790679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55645269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55819706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56341122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56351207	1.00[AMR][1000 genomes]
rs5669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56901340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57083913	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58051959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58742204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58917466	1.00[AMR][1000 genomes]
rs61421461	1.00[EUR][1000 genomes]
rs74087146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087217	1.00[AMR][1000 genomes]
rs74087219	1.00[AMR][1000 genomes]
rs74087220	1.00[AMR][1000 genomes]
rs74087224	1.00[AMR][1000 genomes]
rs74089179	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74089189	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74089196	1.00[EUR][1000 genomes]
rs74090215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090216	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090258	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090260	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090263	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090271	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090283	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090292	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090908	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7527083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7537247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71556400-71560800	Weak transcription	HSMMtube	muscle
2	chr1:71560000-71561200	Enhancers	Fetal Brain Male	brain
3	chr1:71560400-71561600	Enhancers	Rectal Mucosa Donor 31	rectum

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