Variant report

Variant	rs57083913
Chromosome Location	chr1:71551473-71551474
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:71547040..71549249-chr1:71549673..71553160,6	K562	blood:

Variant related genes	Relation type
ENSG00000229956	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs17090783	1.00[EUR][1000 genomes]
rs17090812	1.00[EUR][1000 genomes]
rs2790678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2790679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55645269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55819706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56341122	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56351207	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5669	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56901340	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58051959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58742204	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58917466	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61421461	1.00[EUR][1000 genomes]
rs74087146	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087147	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087171	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087217	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087219	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087220	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087224	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089179	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74089189	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74089196	1.00[EUR][1000 genomes]
rs74090215	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090216	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090219	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090225	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090240	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090247	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090248	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090249	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090250	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090254	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090269	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7527083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7537247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71547600-71551600	Weak transcription	HSMMtube	muscle
2	chr1:71547600-71551600	Weak transcription	NHDF-Ad	bronchial
3	chr1:71547600-71551800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:71547600-71555200	Weak transcription	Lung	lung
5	chr1:71547600-71555800	Weak transcription	NHLF	lung
6	chr1:71547800-71551600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr1:71547800-71551600	Weak transcription	Fetal Intestine Small	intestine
8	chr1:71547800-71551600	Weak transcription	HSMM	muscle
9	chr1:71547800-71551800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:71547800-71551800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr1:71547800-71551800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:71547800-71554600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:71549600-71555200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr1:71550800-71553400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:71551000-71552000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:71551200-71551800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:71551200-71552400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:71551400-71552000	Enhancers	NH-A	brain
19	chr1:71551400-71552400	Enhancers	NHEK	skin
20	chr1:71551400-71553000	Weak transcription	Spleen	Spleen
21	chr1:71551400-71553200	Enhancers	Muscle Satellite Cultured Cells	--

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