Variant report

Variant	rs74090908
Chromosome Location	chr1:71595707-71595708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs2790678	1.00[AMR][1000 genomes]
rs2790679	1.00[AMR][1000 genomes]
rs55645269	1.00[AMR][1000 genomes]
rs55819706	1.00[AMR][1000 genomes]
rs56341122	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56351207	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5669	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56901340	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57083913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58051959	1.00[AMR][1000 genomes]
rs58742204	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58917466	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087146	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087147	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087165	1.00[AMR][1000 genomes]
rs74087166	1.00[AMR][1000 genomes]
rs74087171	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087216	1.00[EUR][1000 genomes]
rs74087217	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087219	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087220	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087224	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74089179	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089189	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090215	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090216	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090219	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090225	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090230	1.00[AMR][1000 genomes]
rs74090240	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090247	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090248	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090249	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090250	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090254	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090269	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7527083	1.00[AMR][1000 genomes]
rs7537247	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521769	chr1:71578442-71633719	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv947533	chr1:71585150-71624438	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv870650	chr1:71590877-71642977	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3362305	chr1:71594980-71631787	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71595400-71595800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:71595400-71595800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:71595400-71596800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr1:71595600-71595800	ZNF genes & repeats	Pancreas	Pancrea

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