Variant report

Variant	rs74087224
Chromosome Location	chr1:71631936-71631937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs2790678	1.00[AMR][1000 genomes]
rs2790679	1.00[AMR][1000 genomes]
rs55645269	1.00[AMR][1000 genomes]
rs55819706	1.00[AMR][1000 genomes]
rs56341122	1.00[AMR][1000 genomes]
rs56351207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs5669	1.00[AMR][1000 genomes]
rs56901340	1.00[AMR][1000 genomes]
rs57083913	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58051959	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58742204	1.00[AMR][1000 genomes]
rs58917466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087146	1.00[AMR][1000 genomes]
rs74087147	1.00[AMR][1000 genomes]
rs74087165	1.00[AMR][1000 genomes]
rs74087166	1.00[AMR][1000 genomes]
rs74087171	1.00[AMR][1000 genomes]
rs74087216	1.00[EUR][1000 genomes]
rs74087217	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74089189	1.00[AMR][1000 genomes]
rs74090215	1.00[AMR][1000 genomes]
rs74090216	1.00[AMR][1000 genomes]
rs74090219	1.00[AMR][1000 genomes]
rs74090225	1.00[AMR][1000 genomes]
rs74090230	1.00[AMR][1000 genomes]
rs74090240	1.00[AMR][1000 genomes]
rs74090247	1.00[AMR][1000 genomes]
rs74090248	1.00[AMR][1000 genomes]
rs74090249	1.00[AMR][1000 genomes]
rs74090250	1.00[AMR][1000 genomes]
rs74090254	1.00[AMR][1000 genomes]
rs74090258	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090260	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090263	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090269	1.00[AMR][1000 genomes]
rs74090271	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090283	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090292	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090908	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7527083	1.00[AMR][1000 genomes]
rs7537247	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521769	chr1:71578442-71633719	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv870650	chr1:71590877-71642977	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv818211	chr1:71603703-71633719	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv997782	chr1:71628776-71668906	Enhancers Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71625400-71637800	Weak transcription	Pancreas	Pancrea
2	chr1:71631000-71632200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:71631600-71632800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:71631600-71633400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:71631800-71632800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:71631800-71632800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:71631800-71632800	Enhancers	Fetal Lung	lung
8	chr1:71631800-71633000	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr1:71631800-71633000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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