Variant report

Variant	rs74090258
Chromosome Location	chr1:71545179-71545180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr1:71545092-71548064	SK-N-SH	brain:	n/a	chr1:71546259-71546268
2	POLR2A	chr1:71518050-71545780	K562	blood:	n/a	n/a
3	SIN3A	chr1:71544930-71547223	H1-hESC	embryonic stem cell:	n/a	chr1:71546975-71546988 chr1:71546259-71546268

No.	Distal block	Cell Line	Cell type
1	chr1:71528704..71533041-chr1:71544796..71547832,3	MCF-7	breast:
2	chr1:71524441..71526375-chr1:71544715..71546592,2	MCF-7	breast:
3	chr1:71511577..71513859-chr1:71544920..71548466,4	K562	blood:
4	chr1:71537451..71540868-chr1:71542769..71545634,3	MCF-7	breast:
5	chr1:71538487..71540751-chr1:71543971..71546262,2	MCF-7	breast:
6	chr1:71517800..71519685-chr1:71543995..71546531,2	MCF-7	breast:

Variant related genes	Relation type
ZRANB2-AS2	TF binding region
ENSG00000132485	Chromatin interaction
ENSG00000050628	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs17090783	1.00[EUR][1000 genomes]
rs17090812	1.00[EUR][1000 genomes]
rs2790678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2790679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55645269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55819706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56341122	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56351207	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5669	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56901340	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57083913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58051959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58742204	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58917466	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61421461	1.00[EUR][1000 genomes]
rs74087146	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087147	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087171	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087217	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087219	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087220	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087224	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089179	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74089189	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74089196	1.00[EUR][1000 genomes]
rs74090215	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090216	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090219	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090225	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090240	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090247	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090248	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090249	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090250	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090254	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090269	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7527083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7537247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71535000-71545800	Weak transcription	Gastric	stomach
2	chr1:71537400-71545800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:71537400-71545800	Weak transcription	Lung	lung
4	chr1:71537600-71545400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:71537600-71545400	Weak transcription	Aorta	Aorta
6	chr1:71537600-71545800	Weak transcription	Spleen	Spleen
7	chr1:71537800-71545400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:71540200-71545200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr1:71541600-71545400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr1:71541800-71545400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:71541800-71545400	Weak transcription	Ovary	ovary
12	chr1:71541800-71545400	Weak transcription	Thymus	Thymus
13	chr1:71542000-71545200	Weak transcription	Psoas Muscle	Psoas
14	chr1:71542800-71545200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr1:71543600-71545200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr1:71543600-71545400	Weak transcription	Fetal Muscle Leg	muscle
17	chr1:71543600-71545400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr1:71543600-71545800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:71543600-71545800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:71543600-71545800	Weak transcription	Esophagus	oesophagus
21	chr1:71543600-71545800	Weak transcription	Left Ventricle	heart
22	chr1:71543600-71545800	Weak transcription	Pancreas	Pancrea
23	chr1:71543600-71545800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr1:71543600-71545800	Weak transcription	Small Intestine	intestine
25	chr1:71544200-71545200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:71544200-71545200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr1:71544200-71545600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:71544200-71545800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr1:71544200-71545800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr1:71544400-71545200	Transcr. at gene 5' and 3'	Dnd41	blood
31	chr1:71544400-71545400	Weak transcription	Fetal Thymus	thymus
32	chr1:71544400-71545600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:71544400-71545600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:71544400-71547400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr1:71544400-71547600	Active TSS	Rectal Smooth Muscle	rectum
36	chr1:71544600-71545200	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
37	chr1:71544600-71545200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr1:71544600-71545200	Enhancers	Brain Hippocampus Middle	brain
39	chr1:71544600-71545200	Enhancers	Fetal Heart	heart
40	chr1:71544600-71545200	Active TSS	Fetal Kidney	kidney
41	chr1:71544600-71545200	Transcr. at gene 5' and 3'	HSMM	muscle
42	chr1:71544600-71545400	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
43	chr1:71544600-71545400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr1:71544600-71545400	Enhancers	Brain Angular Gyrus	brain
45	chr1:71544600-71545400	Enhancers	Brain Anterior Caudate	brain
46	chr1:71544600-71545400	Enhancers	Colon Smooth Muscle	Colon
47	chr1:71544600-71545400	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr1:71544600-71545600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr1:71544600-71545600	Enhancers	Brain Cingulate Gyrus	brain
50	chr1:71544600-71545800	Enhancers	Primary neutrophils fromperipheralblood	blood

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