Variant report

Variant	rs7537247
Chromosome Location	chr1:71743235-71743236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10889915	1.00[EUR][1000 genomes]
rs1354730	1.00[EUR][1000 genomes]
rs1506450	1.00[EUR][1000 genomes]
rs1517763	1.00[EUR][1000 genomes]
rs17090783	1.00[EUR][1000 genomes]
rs17090812	1.00[EUR][1000 genomes]
rs2790678	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2790679	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4650108	1.00[EUR][1000 genomes]
rs4650110	1.00[EUR][1000 genomes]
rs56341122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56351207	1.00[AMR][1000 genomes]
rs5669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56901340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57083913	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58917466	1.00[AMR][1000 genomes]
rs61421461	1.00[EUR][1000 genomes]
rs74087217	1.00[AMR][1000 genomes]
rs74087219	1.00[AMR][1000 genomes]
rs74087220	1.00[AMR][1000 genomes]
rs74087224	1.00[AMR][1000 genomes]
rs74090225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090250	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090271	1.00[AMR][1000 genomes]
rs74090283	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090908	1.00[AMR][1000 genomes]
rs7527083	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949599	chr1:71655652-72327802	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1005726	chr1:71701840-71953242	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv1848377	chr1:71718838-71964514	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv531880	chr1:71724941-71964501	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71742400-71751000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links