Variant report

Variant	rs74090254
Chromosome Location	chr1:71544332-71544333
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr1:71544276-71544442	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr1:71518050-71545780	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:71537451..71540868-chr1:71542769..71545634,3	MCF-7	breast:
2	chr1:71538487..71540751-chr1:71543971..71546262,2	MCF-7	breast:
3	chr1:71517800..71519685-chr1:71543995..71546531,2	MCF-7	breast:

Variant related genes	Relation type
ZRANB2-AS2	TF binding region

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs17090783	1.00[EUR][1000 genomes]
rs17090812	1.00[EUR][1000 genomes]
rs2790678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2790679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55645269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55819706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56341122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56351207	1.00[AMR][1000 genomes]
rs5669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56901340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57083913	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58051959	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58742204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58917466	1.00[AMR][1000 genomes]
rs61421461	1.00[EUR][1000 genomes]
rs74087146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087171	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087217	1.00[AMR][1000 genomes]
rs74087219	1.00[AMR][1000 genomes]
rs74087220	1.00[AMR][1000 genomes]
rs74087224	1.00[AMR][1000 genomes]
rs74089179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74089189	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74089196	1.00[EUR][1000 genomes]
rs74090215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090219	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090225	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090230	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090249	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090258	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090260	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090263	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090271	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090283	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090292	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090908	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7527083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7537247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71520600-71544600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:71521800-71544600	Strong transcription	HSMM	muscle
3	chr1:71522000-71544400	Strong transcription	HMEC	breast
4	chr1:71522200-71544600	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr1:71522600-71544400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr1:71522600-71544400	Strong transcription	NH-A	brain
7	chr1:71522800-71544400	Strong transcription	Fetal Thymus	thymus
8	chr1:71522800-71544600	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr1:71522800-71544600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr1:71523000-71544400	Strong transcription	Osteobl	bone
11	chr1:71523000-71544600	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr1:71523000-71544600	Strong transcription	Placenta	Placenta
13	chr1:71523200-71544400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:71523400-71544600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
15	chr1:71523600-71544800	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr1:71523600-71544800	Strong transcription	Fetal Lung	lung
17	chr1:71523800-71544400	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr1:71524400-71544400	Strong transcription	Skeletal Muscle Female	skeletal muscle
19	chr1:71524600-71544400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
20	chr1:71525000-71544600	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr1:71525400-71544600	Strong transcription	Hela-S3	cervix
22	chr1:71526000-71544400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr1:71527400-71544600	Strong transcription	HepG2	liver
24	chr1:71535000-71544800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:71535000-71545800	Weak transcription	Gastric	stomach
26	chr1:71536200-71544800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr1:71536400-71544400	Strong transcription	Primary hematopoietic stem cells	blood
28	chr1:71537400-71544800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr1:71537400-71545800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:71537400-71545800	Weak transcription	Lung	lung
31	chr1:71537600-71545000	Weak transcription	Fetal Brain Male	brain
32	chr1:71537600-71545000	Weak transcription	Stomach Mucosa	stomach
33	chr1:71537600-71545400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr1:71537600-71545400	Weak transcription	Aorta	Aorta
35	chr1:71537600-71545800	Weak transcription	Spleen	Spleen
36	chr1:71537800-71544600	Weak transcription	Fetal Heart	heart
37	chr1:71537800-71545400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr1:71538000-71544800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr1:71538800-71544600	Weak transcription	Colon Smooth Muscle	Colon
40	chr1:71539600-71544400	Strong transcription	Primary T cells from cord blood	blood
41	chr1:71539600-71544400	Strong transcription	NHEK	skin
42	chr1:71539800-71544400	Strong transcription	NHLF	lung
43	chr1:71540200-71545200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr1:71540400-71544400	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr1:71541000-71544600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
46	chr1:71541600-71544600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr1:71541600-71544600	Weak transcription	Brain Angular Gyrus	brain
48	chr1:71541600-71544600	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr1:71541600-71544800	Weak transcription	Right Ventricle	heart
50	chr1:71541600-71545400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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