Variant report

Variant	rs74090260
Chromosome Location	chr1:71546210-71546211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr1:71545092-71548064	SK-N-SH	brain:	n/a	chr1:71546259-71546268
2	MXI1	chr1:71545218-71547231	IMR90	lung:	n/a	chr1:71546259-71546268
3	RCOR1	chr1:71546143-71547621	K562	blood:	n/a	n/a
4	USF1	chr1:71546128-71546314	HepG2	liver:	n/a	chr1:71546258-71546269
5	USF1	chr1:71546058-71546454	ECC-1	luminal epithelium:	n/a	chr1:71546258-71546269
6	SIN3AK20	chr1:71545843-71546305	H1-hESC	embryonic stem cell:	n/a	n/a
7	WRNIP1	chr1:71545827-71547231	GM12878	blood:	n/a	n/a
8	CTCF	chr1:71546092-71546243	K562	blood:	n/a	n/a
9	USF1	chr1:71545988-71546406	H1-hESC	embryonic stem cell:	n/a	chr1:71546258-71546269
10	POLR2A	chr1:71545777-71547708	Hela-S3	cervix:	n/a	n/a
11	POLR2A	chr1:71545927-71547844	GM18505	blood:	n/a	n/a
12	POLR2A	chr1:71545866-71547791	K562	blood:	n/a	n/a
13	POLR2A	chr1:71545832-71547817	GM12891	blood:	n/a	n/a
14	MAX	chr1:71545844-71546369	K562	blood:	n/a	chr1:71546258-71546266 chr1:71546260-71546269 chr1:71545964-71545975 chr1:71546262-71546271 chr1:71545965-71545975 chr1:71546259-71546270
15	POLR2A	chr1:71545726-71546305	SK-N-MC	brain:	n/a	n/a
16	MAX	chr1:71545794-71547480	GM12878	blood:	n/a	chr1:71546258-71546266 chr1:71546260-71546269 chr1:71545964-71545975 chr1:71546262-71546271 chr1:71545965-71545975 chr1:71546259-71546270
17	USF1	chr1:71545974-71546883	ECC-1	luminal epithelium:	n/a	chr1:71546258-71546269
18	MAX	chr1:71545813-71547216	Hela-S3	cervix:	n/a	chr1:71546258-71546266 chr1:71546260-71546269 chr1:71545964-71545975 chr1:71546262-71546271 chr1:71545965-71545975 chr1:71546259-71546270
19	MYC	chr1:71545478-71547160	MCF10A-Er-Src	breast:	n/a	chr1:71546258-71546266 chr1:71546260-71546269 chr1:71545964-71545975 chr1:71546262-71546271 chr1:71545965-71545975 chr1:71546259-71546270
20	POLR2A	chr1:71545890-71547819	K562	blood:	n/a	n/a
21	JUND	chr1:71546195-71547656	K562	blood:	n/a	chr1:71546317-71546331
22	USF1	chr1:71546074-71546386	A549	lung:	n/a	chr1:71546258-71546269
23	MXI1	chr1:71545796-71546311	H1-hESC	embryonic stem cell:	n/a	chr1:71546259-71546268
24	USF2	chr1:71546086-71546343	H1-hESC	embryonic stem cell:	n/a	chr1:71546258-71546269
25	MYC	chr1:71545609-71546300	MCF10A-Er-Src	breast:	n/a	chr1:71546258-71546266 chr1:71546260-71546269 chr1:71545964-71545975 chr1:71546262-71546271 chr1:71545965-71545975 chr1:71546259-71546270
26	MAX	chr1:71545816-71547126	K562	blood:	n/a	chr1:71546258-71546266 chr1:71546260-71546269 chr1:71545964-71545975 chr1:71546262-71546271 chr1:71545965-71545975 chr1:71546259-71546270
27	TAF1	chr1:71545896-71547219	H1-hESC	embryonic stem cell:	n/a	n/a
28	POLR2A	chr1:71545944-71547814	K562	blood:	n/a	n/a
29	CHD2	chr1:71546123-71547161	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr1:71545974-71547881	GM19099	blood:	n/a	n/a
31	MYC	chr1:71545800-71547775	K562	blood:	n/a	chr1:71546258-71546266 chr1:71546260-71546269 chr1:71545964-71545975 chr1:71546262-71546271 chr1:71545965-71545975 chr1:71546259-71546270
32	CHD1	chr1:71545557-71547022	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr1:71545936-71547807	Raji	blood:	n/a	n/a
34	MYC	chr1:71545748-71547643	K562	blood:	n/a	chr1:71546258-71546266 chr1:71546260-71546269 chr1:71545964-71545975 chr1:71546262-71546271 chr1:71545965-71545975 chr1:71546259-71546270
35	CHD1	chr1:71545810-71547424	GM12878	blood:	n/a	n/a
36	USF2	chr1:71546026-71547211	Hela-S3	cervix:	n/a	chr1:71546258-71546269
37	MAX	chr1:71546035-71547272	ECC-1	luminal epithelium:	n/a	chr1:71546258-71546266 chr1:71546260-71546269 chr1:71546262-71546271 chr1:71546259-71546270
38	MAX	chr1:71545705-71546290	A549	lung:	n/a	chr1:71546258-71546266 chr1:71546260-71546269 chr1:71545964-71545975 chr1:71546262-71546271 chr1:71545965-71545975 chr1:71546259-71546270
39	USF1	chr1:71546099-71546363	HepG2	liver:	n/a	chr1:71546258-71546269
40	USF2	chr1:71545924-71547136	GM12878	blood:	n/a	chr1:71546258-71546269
41	USF1	chr1:71546061-71546322	A549	lung:	n/a	chr1:71546258-71546269
42	USF1	chr1:71546063-71546451	A549	lung:	n/a	chr1:71546258-71546269
43	USF1	chr1:71546080-71546351	SK-N-SH_RA	brain:	n/a	chr1:71546258-71546269
44	POLR2A	chr1:71546142-71547653	GM15510	blood:	n/a	n/a
45	MYC	chr1:71545840-71547189	K562	blood:	n/a	chr1:71546258-71546266 chr1:71546260-71546269 chr1:71545964-71545975 chr1:71546262-71546271 chr1:71545965-71545975 chr1:71546259-71546270
46	USF1	chr1:71545956-71546446	SK-N-SH_RA	brain:	n/a	chr1:71546258-71546269
47	USF1	chr1:71546168-71546319	GM12878	blood:	n/a	chr1:71546258-71546269
48	POLR2A	chr1:71545942-71547668	GM18951	blood:	n/a	n/a
49	POLR2A	chr1:71546142-71547800	HepG2	liver:	n/a	n/a
50	POLR2A	chr1:71546111-71547332	GM12892	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:71528704..71533041-chr1:71544796..71547832,3	MCF-7	breast:
2	chr1:71524441..71526375-chr1:71544715..71546592,2	MCF-7	breast:
3	chr1:71511577..71513859-chr1:71544920..71548466,4	K562	blood:
4	chr1:71538487..71540751-chr1:71543971..71546262,2	MCF-7	breast:
5	chr1:71517800..71519685-chr1:71543995..71546531,2	MCF-7	breast:
6	chr1:71545618..71549519-chr1:71556645..71559199,4	K562	blood:

Variant related genes	Relation type
ZRANB2-AS2	TF binding region
ENSG00000050628	Chromatin interaction
ENSG00000132485	Chromatin interaction
ENSG00000229956	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs17090783	1.00[EUR][1000 genomes]
rs17090812	1.00[EUR][1000 genomes]
rs2790678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2790679	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55645269	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55819706	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56341122	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56351207	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs5669	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56901340	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57083913	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58051959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58742204	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58917466	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61421461	1.00[EUR][1000 genomes]
rs74087146	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087147	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087171	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74087217	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087219	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087220	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74087224	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74089179	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74089189	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74089196	1.00[EUR][1000 genomes]
rs74090215	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090216	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090219	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090225	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090240	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090247	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090248	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090249	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090250	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090254	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090258	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090269	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090271	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74090283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74090908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7527083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7537247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71544400-71547400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:71544400-71547600	Active TSS	Rectal Smooth Muscle	rectum
3	chr1:71544600-71547600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr1:71544600-71547600	Active TSS	K562	blood
5	chr1:71544600-71547800	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr1:71544600-71547800	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr1:71544800-71546800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr1:71544800-71547400	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr1:71544800-71547400	Active TSS	Fetal Intestine Large	intestine
10	chr1:71544800-71547400	Active TSS	GM12878-XiMat	blood
11	chr1:71544800-71547600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:71544800-71547800	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr1:71544800-71547800	Active TSS	Colonic Mucosa	Colon
14	chr1:71544800-71547800	Active TSS	HMEC	breast
15	chr1:71545000-71547400	Active TSS	H1 Cell Line	embryonic stem cell
16	chr1:71545000-71547400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr1:71545000-71547400	Active TSS	Brain Germinal Matrix	brain
18	chr1:71545000-71547400	Active TSS	Fetal Brain Male	brain
19	chr1:71545000-71547400	Active TSS	Fetal Intestine Small	intestine
20	chr1:71545000-71547400	Active TSS	Fetal Stomach	stomach
21	chr1:71545000-71547400	Active TSS	Right Atrium	heart
22	chr1:71545000-71547400	Active TSS	Right Ventricle	heart
23	chr1:71545000-71547400	Active TSS	NHLF	lung
24	chr1:71545200-71547000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr1:71545200-71547200	Active TSS	NH-A	brain
26	chr1:71545200-71547400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:71545200-71547400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr1:71545200-71547400	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr1:71545200-71547400	Active TSS	HSMMtube	muscle
30	chr1:71545200-71547400	Active TSS	NHEK	skin
31	chr1:71545200-71547600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
32	chr1:71545200-71547600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr1:71545200-71547600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr1:71545200-71547600	Active TSS	HUES48 Cell Line	embryonic stem cell
35	chr1:71545200-71547600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:71545200-71547800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr1:71545200-71547800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr1:71545200-71547800	Active TSS	Psoas Muscle	Psoas
39	chr1:71545200-71547800	Active TSS	A549	lung
40	chr1:71545200-71547800	Active TSS	Hela-S3	cervix
41	chr1:71545200-71547800	Active TSS	HSMM	muscle
42	chr1:71545400-71546400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
43	chr1:71545400-71546800	Bivalent/Poised TSS	HepG2	liver
44	chr1:71545400-71547000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr1:71545400-71547000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr1:71545400-71547000	Active TSS	Fetal Thymus	thymus
47	chr1:71545400-71547200	Active TSS	H9 Cell Line	embryonic stem cell
48	chr1:71545400-71547200	Active TSS	Muscle Satellite Cultured Cells	--
49	chr1:71545400-71547200	Active TSS	Rectal Mucosa Donor 31	rectum
50	chr1:71545400-71547400	Active TSS	HUES64 Cell Line	embryonic stem cell

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