Variant report

Variant	rs74124007
Chromosome Location	chr10:25728556-25728557
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25727136..25729248-chr10:25744729..25747128,2	MCF-7	breast:
2	chr10:25726717..25730282-chr10:25730723..25733512,4	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12768998	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12770371	0.92[ASN][1000 genomes]
rs12777013	0.92[ASN][1000 genomes]
rs12778704	0.92[ASN][1000 genomes]
rs12778817	0.92[ASN][1000 genomes]
rs12782899	0.93[EUR][1000 genomes]
rs34165837	0.92[ASN][1000 genomes]
rs34207877	0.92[ASN][1000 genomes]
rs34393723	0.92[ASN][1000 genomes]
rs34427293	0.92[ASN][1000 genomes]
rs34573334	0.92[ASN][1000 genomes]
rs34784889	0.92[ASN][1000 genomes]
rs34823294	0.92[ASN][1000 genomes]
rs34893617	0.92[ASN][1000 genomes]
rs35173442	0.92[ASN][1000 genomes]
rs35257646	0.92[ASN][1000 genomes]
rs35288024	0.87[EUR][1000 genomes]
rs35316012	0.92[ASN][1000 genomes]
rs35361058	0.92[ASN][1000 genomes]
rs35548799	0.81[EUR][1000 genomes]
rs35677024	0.92[ASN][1000 genomes]
rs35677680	0.92[ASN][1000 genomes]
rs35709145	0.92[ASN][1000 genomes]
rs35850110	0.92[ASN][1000 genomes]
rs35898125	0.92[ASN][1000 genomes]
rs35989426	0.92[ASN][1000 genomes]
rs36035509	0.92[ASN][1000 genomes]
rs59342106	0.92[ASN][1000 genomes]
rs61195869	0.92[ASN][1000 genomes]
rs61261208	0.92[ASN][1000 genomes]
rs71495430	0.92[ASN][1000 genomes]
rs71495431	0.92[ASN][1000 genomes]
rs71495432	0.92[ASN][1000 genomes]
rs71495433	0.92[ASN][1000 genomes]
rs71495434	0.92[ASN][1000 genomes]
rs71495435	0.92[ASN][1000 genomes]
rs71495436	0.92[ASN][1000 genomes]
rs71495437	0.92[ASN][1000 genomes]
rs71495452	0.92[ASN][1000 genomes]
rs71495461	0.81[EUR][1000 genomes]
rs74123869	0.92[ASN][1000 genomes]
rs74123870	0.92[ASN][1000 genomes]
rs74123871	0.92[ASN][1000 genomes]
rs74123872	0.92[ASN][1000 genomes]
rs74123875	0.92[ASN][1000 genomes]
rs74126023	0.92[ASN][1000 genomes]
rs74126025	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2760120	chr10:25721094-25728594	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv2761584	chr10:25727933-25732659	Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25725800-25730200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:25726000-25730000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr10:25727800-25729200	Weak transcription	Psoas Muscle	Psoas
4	chr10:25728400-25731200	Active TSS	Skeletal Muscle Female	skeletal muscle

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