The 2.0 version of rSNPBase

Variant report

Variant rs7530480
Chromosome Location chr1:46399655-46399656
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46380800-46404600 Weak transcription Rectal Smooth Muscle rectum
2 chr1:46387600-46425000 Weak transcription Fetal Muscle Trunk muscle
3 chr1:46388400-46408200 Weak transcription Brain Germinal Matrix brain
4 chr1:46389000-46410400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr1:46391800-46408000 Weak transcription Primary B cells from cord blood blood
6 chr1:46392600-46410400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
7 chr1:46392600-46411200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
8 chr1:46393400-46410600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr1:46395200-46404200 Weak transcription Primary T cells fromperipheralblood blood
10 chr1:46395200-46420600 Weak transcription Placenta Amnion Placenta Amnion
11 chr1:46395400-46402000 Weak transcription H9 Cell Line embryonic stem cell
12 chr1:46395400-46402200 Weak transcription Fetal Stomach stomach
13 chr1:46395400-46402200 Weak transcription Left Ventricle heart
14 chr1:46395400-46404400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr1:46395400-46406800 Weak transcription Fetal Intestine Small intestine
16 chr1:46395400-46409000 Weak transcription Psoas Muscle Psoas
17 chr1:46395400-46410400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
18 chr1:46395400-46410600 Weak transcription Small Intestine intestine
19 chr1:46395400-46411400 Weak transcription Duodenum Mucosa Duodenum
20 chr1:46395400-46412800 Weak transcription Fetal Muscle Leg muscle
21 chr1:46395400-46417800 Weak transcription HSMMtube muscle
22 chr1:46395400-46419000 Weak transcription Sigmoid Colon Sigmoid Colon
23 chr1:46395600-46410600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
24 chr1:46395800-46404800 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr1:46395800-46419200 Weak transcription Right Ventricle heart
26 chr1:46396400-46403800 Weak transcription HSMM muscle
27 chr1:46396600-46401200 Weak transcription iPS-18 Cell Line embryonic stem cell
28 chr1:46396600-46402000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
29 chr1:46396600-46402000 Weak transcription HUES6 Cell Line embryonic stem cell
30 chr1:46396600-46410800 Weak transcription Fetal Lung lung
31 chr1:46396800-46401600 Weak transcription HUES48 Cell Line embryonic stem cell
32 chr1:46396800-46407600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
33 chr1:46396800-46410400 Weak transcription NHLF lung
34 chr1:46397000-46401400 Weak transcription HUES64 Cell Line embryonic stem cell
35 chr1:46397000-46410400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr1:46397000-46410400 Weak transcription Fetal Heart heart
37 chr1:46398400-46400200 Weak transcription GM12878-XiMat blood
38 chr1:46398400-46412000 Weak transcription Rectal Mucosa Donor 31 rectum
39 chr1:46398600-46408600 Weak transcription Skeletal Muscle Female skeletal muscle
40 chr1:46399600-46400000 Weak transcription Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015