Variant report

Variant	rs7550854
Chromosome Location	chr1:172897845-172897846
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172896775..172899562-chr1:172899957..172901499,2	K562	blood:
2	chr1:172897496..172899250-chr1:172899389..172902257,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10489275	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11799419	0.81[AFR][1000 genomes]
rs16845151	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16845169	1.00[AMR][1000 genomes]
rs4615873	1.00[AMR][1000 genomes]
rs6658802	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73049845	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7416404	1.00[AMR][1000 genomes]
rs7524172	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7548612	1.00[AMR][1000 genomes]
rs7550931	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172895800-172900000	Enhancers	Muscle Satellite Cultured Cells	--
2	chr1:172895800-172901600	Weak transcription	K562	blood
3	chr1:172895800-172902200	Weak transcription	Stomach Mucosa	stomach
4	chr1:172896400-172899600	Enhancers	NHLF	lung
5	chr1:172896400-172899600	Enhancers	Osteobl	bone
6	chr1:172896400-172899800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:172896600-172899200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:172896600-172899800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:172896600-172900200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:172897000-172899600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:172897000-172899600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:172897000-172899600	Enhancers	HMEC	breast
13	chr1:172897000-172899800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:172897200-172898200	Enhancers	Colon Smooth Muscle	Colon
15	chr1:172897200-172898600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:172897200-172898600	Enhancers	HSMM	muscle
17	chr1:172897200-172899000	Enhancers	Placenta	Placenta
18	chr1:172897200-172899200	Enhancers	HUVEC	blood vessel
19	chr1:172897200-172899200	Enhancers	NH-A	brain
20	chr1:172897200-172899600	Enhancers	Placenta Amnion	Placenta Amnion
21	chr1:172897200-172899600	Enhancers	NHDF-Ad	bronchial
22	chr1:172897400-172898400	Enhancers	Rectal Smooth Muscle	rectum
23	chr1:172897400-172898600	Enhancers	Hela-S3	cervix
24	chr1:172897400-172899200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:172897400-172903000	Weak transcription	Esophagus	oesophagus
26	chr1:172897600-172898000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr1:172897600-172898000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:172897600-172899600	Enhancers	HSMMtube	muscle
29	chr1:172897600-172902200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:172897600-172903000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr1:172897800-172898000	Enhancers	NHEK	skin
32	chr1:172897800-172898600	Enhancers	Fetal Lung	lung
33	chr1:172897800-172898800	Enhancers	A549	lung
34	chr1:172897800-172903000	Weak transcription	Fetal Stomach	stomach

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